barSeed - Barley Seed Development Database

Probe CUST_38052_PI390587928

Source Contig U35_22571

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38052_PI390587928	Hv_44K_v2	AAGAATCCGGAGCACTACTTTGTTGCCACCCAGGATTCTGGTCTCCGGGCAAAGCTACGG	601	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.495	1.197	1.142	0.710	0.385	0.340
Raw	486.841	600.795	508.744	452.362	95.477	91.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3981.2	1275	2e-24	608 - 667	100	60 / 60	plus	ABC42298
MLOC	MLOC_3981.1	1292	2e-24	632 - 691	100	60 / 60	plus	ABC42298
JLOC1	JLOC1_2412.1	1286	8e-25	625 - 684	100	60 / 60	plus
Harvest21	ABC17083	659	4e-24	602 - 659	100	58 / 58	plus
Harvest35	U35_22571	661	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_22571 661 Hv_44K_v2
ACGAACCCTACCCGGCTGCGCCGCCGCCCATTCGTGCAGGAGCTGGAGCTGCGCCGCCGC
CGCTCTTCCAGGTGCAGGAGGGTCGCCGTCTGCCTGCCCAGCAAACCCGCCCGTCCGGCG
ACACCGCGTTCTCGCCTGCCCGCTGGTCCGGCGACACCGTCCGCCCGCCCGCTCGTTCTG
GAGGGCAGCCGCCGCTCGTCTAGGAGAGCCACCGTCGCCGACTCACCGCAGACGCCGTCT
GCCTGCCCGCGTACGCTCGTCCGCGATGAGGGTGAAGAGGCGATCGCGGCACCGCAAGGT
GGTCAAGTTCTACTCCACCTGCTTTGGCTTCCGCGAGCCCTACAAGGTGCTCATCGACGG
CACCTTCGTGCACCACCTCCTCGTCCACAAACTCCTCCCCGCCGACGACGCCCTCCGCGA
GCTCCTCTCCGCGTCCAGGGCTCCCCCGCTGTTGACCTCCAAGTGCGTCGTCGCCGAGCT
CAGGCGCCTCGGAAAGTCCCACTCCGAGGCGTTCGACGCCGCCCAACTCGTCGCCACCGC
CAGCTGTGAGCATGACAAAGTGGTCAGTGCGGTGGACTGTATTCTGTCACTTGTTGGTGA
TAAGAATCCGGAGCACTACTTTGTTGCCACCCAGGATTCTGGTCTCCGGGCAAAGCTACG
G

Homology of Contig U35_22571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g26850.1	278	5e-66	protein\|rRNA-processing protein FCF, putative, expressed
Brachypodium v1_2	Bradi3g56710.1	261	5e-73
Arabidopsis v10	None