barSeed - Barley Seed Development Database

Probe CUST_38051_PI390587928

Source Contig U35_22572

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38051_PI390587928	Hv_44K_v2	AGTTGCTCCTCTATGTATGCACTGCAAATCATGAATATGTTGCCAAGCCATAAGAAAAAA	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374970	2842	7e-23	553 - 609	100	57 / 57	plus	ABC20795
Harvest21	ABC20795	602	3e-25	532 - 591	100	60 / 60	plus	ABC20795
Harvest35	U35_22572	602	3e-25	532 - 591	100	60 / 60	plus
Harvest35	U35_19000	1308	1e-23	1233 - 1289	100	57 / 57	plus

Contig Sequence (602 bp)

>U35_22572 602 Hv_44K_v2
GCAGGAGGAGCTAGCCGAGCCTGCCTCTCGCCGCCGCTCCCTTCCGCCTCCATCCTCCAG
CCGCGGCAGCGCGCGTCGGCGTCTCTCGTTCCACTGCGATACAGCTGGGGTGGTGGTGGA
GGATGGCGAAGGCCGGCGGGGGGCTGATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCC
GGCCGGTGGTGCTGTCCATGTACCGGCAGATCCTGCGGGCGCTCAACTCGCCGGCGCTGC
CGCTGGGCCACGCGGCGCGGCTGGCCAAGAAGGCCGAGTGCCGCGCCATATTCATCTTCG
GCGCCGAGGAGAGGTCGCTGCACAACATCCAGGACCTCCTCGACGCCGCACGACACACCC
TCGGCCTCCTCAACCGCGGCCGCCTCCCCTAGAGACGAAGCCCTAGCCTCGCGGGTACCT
CGTCTCTTCCCTGTTTCCTTTTAGCCTATGTTCGAATCGTCGATTGTAATGTGTAGTAGT
ACGGCATTAATCTGGTGCCATCTTTCTTTCAATTGAAACCATCTGCTGCGGAGTTGCTCC
TCTATGTATGCACTGCAAATCATGAATATGTTGCCAAGCCATAAGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_22572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None