barSeed - Barley Seed Development Database

Probe CUST_3804_PI390587928

Source Contig U35_14352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3804_PI390587928	Hv_44K_v2	GTACTCTAGTCCCTATCATCTTTGTGTGTTTATGTCCTGTAATGGAATAATTGATGTTGT	1727	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55949.1	1845	2e-24	1677 - 1736	100	60 / 60	plus	ABC08528
MLOC	MLOC_55950.1	4899	2e-24	1676 - 1735	100	60 / 60	plus	ABC08528
JLOC1	JLOC1_36133.1	4861	8e-25	3126 - 3185	100	60 / 60	minus
Harvest21	ABC08528	1852	3e-25	1719 - 1778	100	60 / 60	plus	ABC08528
Harvest35	U35_50890	801	3e-25	90 - 149	100	60 / 60	minus
Harvest35	U35_14352	1914	3e-25	1728 - 1787	100	60 / 60	plus

Contig Sequence (1914 bp)

>U35_14352 1914 Hv_44K_v2
TCCCGGCTGAAACCCTAGGACCCGATGGCGTAGCCACCATTCACAGACGCAGCCCGCCCG
CCGCCGCCGCCGCCATGCCGCCGTTCAGGCGCTGGGCGGATCTGCCGGCGGACCTCCTCT
GCCGCATCGGCGACAGCCTCGACCTCAAGTGCTACGCCAGCGCGCGGGGCGCCTGCACGG
CCTGGCGCTGCGCGCTCTCGCCGCCGTCCCCGTCGCTCCTCGTCGTCCTTGACGACGCCA
GGTGTCGCCCCTCCGCCGCCTCGCTCCCCACGCACCGCTCCTTCGAGCTCAAGAACATCC
TCTCGGGGGGCCGATGCGTCGGCTCCAGCAACGGCTGGCTCGCCCTCTCCGTCTGCCTCT
TCGGCGGCCAGAGCATGTTCAGCCTCTTCAACCCCATCACCGCTACGGAGATCCTTCTGC
CGCCGCTGATCTACGAGAGCCGTTGGGTCTCCAAGCTCGTCTTCGCGCCCAACCCCGCCA
GGGACGACTTCGCCGCCGCCGCCATCTGCGACATCGACAGGCTCGCCTACGTCACCGCGG
GGGCCAGGAGGTGGGCCATCCTCGATCCCGTCCGCCTCGCCAGCGGAGATCAGCTCGCCG
ACGTTGTCTACCATGAAAAAGGTAGGGTCTACTGCCTCACTCGCTATGGAGATGTCCACG
TGCTCCGCCTGCCGGAGCGCCGCCGCCGGAAGCCTATCGTCGTCGAGGATCCAGCTGGCC
CGTCAGAGCCAGTGATTACTTTAGGAAGTCCCGCACTCAGTCTTCAGGGAAGAAGACAGC
GCAACTTGCGCATGATCTGCTATGAACATCGTAGATGGAGGGAGCAGCAGCTCCCAATTG
CCACGATGAAGGCTGCCTTCTGCCCAGATGTGTTTATGCCTAGGAGAGTTCCTCCTGGAT
CTGTCGGACCGGACCTAAATGCACCGGCCACAGTTGAGCCCATGTTGGCTGAGGGCAACT
TGCCGTTCGACCCTGCTACCTGTTTTGCAGCGCCATACAACACGGTGTCGGTTTTCACTA
GTGCCAAGAATCTGGTGTTCTGCGACGGTAACCTCTACCAAATCTGGAGAAATGCTAGCT
GCACGGTTACTCTCCAGCTGCCAGGAGGCGGTCACCGCCGTGTAGCCGAGAACGAAATCT
TGGTTTTGAGGTATTATCCCCGTCGCCAACCATGCTGGGATGCCGTGACCGATCTGGGAG
GCTACTCAGTGTTTGTCGGGAAGAACAATGCGGTGTCCATGTATGCTGAAGATGTGCCAG
GATTGAAGGGTAATTGTGTGTACTGGATCGGCGGGAGGGGTAGGGATCAGGGCATGGTCT
TTGACATGGGTACTGGGAGGTCTACACCTTGCCTTCCCGTTGCTGGTGCTGGGGTTGTTC
CGGGGCCTCCACAGAGCACAATCTGCTGGTACTTTCTCAGCGACATAGTGAATAACTGCA
ACATAAGTGCAGGAAGAAGAGTTTATCAGACCCGGGCAAGGGTCCGGGCTGAACGTGAAC
AAGATTTGGAGGAGTAATGCGTCGCCAAGCAGATTGGCGACATAGTGAGCACCACCGGCC
ACATCGTTGGAAGCTATGTTTATCATGCCTGAGCAAGAGCCGCCTCTCATATGGAGAGGC
ACTCAAGAACTGGGCAGAGTGTAATTGCCTATTGTAGCCAATAGTTCGTTTTAATTCATC
TGTTTCCTAAAATAATTTGCTTCAGTATTGTTGTTGGTTGTTGGTTTGTACTCTAGTCCC
TATCATCTTTGTGTGTTTATGTCCTGTAATGGAATAATTGATGTTGTAAAACTTATATTC
ATCATATTATGATGGAGTAAGAGAAGAGGACTTTAAGATATTTGCAAAAAAAAAAAAAAA
AAAATGTTCTTTTATCGATGTATGGCATGTTCTTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39660.1	529	0.0	protein\|OsFBDUF22 - F-box and DUF domain containing protein, expressed
Brachypodium v1_2	Bradi5g13180.1	489	0.0
Arabidopsis v10	None