barSeed - Barley Seed Development Database

Probe CUST_38035_PI390587928

Source Contig U35_46530

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38035_PI390587928	Hv_44K_v2	CTTATGAGGAGACAAGAAGCAGAAAACATGGCACTTATCAAGAATCAATTGGAAGAGGAG	322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376942	3346	2e-24	1340 - 1399	100	60 / 60	minus	ABC05251 ABC07507
MLOC	MLOC_15145.4	840	2e-24	492 - 551	100	60 / 60	plus	None
MLOC	MLOC_15145.3	1207	2e-24	541 - 600	100	60 / 60	plus	None
MLOC	MLOC_15145.2	1624	2e-24	1080 - 1139	100	60 / 60	plus	None
JLOC1	JLOC1_10367.1	1345	8e-25	538 - 597	100	60 / 60	plus
Harvest21	ABC46757	548	3e-25	323 - 382	100	60 / 60	plus
Harvest35	U35_46530	548	3e-25	323 - 382	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_46530 548 Hv_44K_v2
GGTCACCTCCCAGTCATGGGAGGGGTGTCTCGCCCAGTGCGCCAATGTCGTCAGCACCGA
CTTCATTCAGAACTACACGATCCAGTACGAGATCCCCGCCGCTGCGTTGGTGGAGGTGGA
CAACGAGTCGCAGGCCCGGGCTGCTGTGGACCTGATGAACAACTTCCCGTTCATGATCGG
CGGGATGCCCAGGCCTGTGAGGGCTGTCTTTGCAAAGCCCGAGATGTTTTCGGACCGCCC
TAGGAAGCCTGGCTTGAAGATTGAGTTTAGCTGGGTAAAGCAAGGGGATCCAGGGTATGA
TGGGATGAATAAGCTCAAGGGCCTTATGAGGAGACAAGAAGCAGAAAACATGGCACTTAT
CAAGAATCAATTGGAAGAGGAGAAGGAGCTGGCGGTGCAGCAGCAGGAAACCCTGGAAGC
AAACAGCAACAAGTATGGCATGCTCGAGAACCTGATGAACAACGGGGACATCACTAAGCT
CGCCCAGCATTACAAGGTCAAGCTGGGGGATGACTGATGGGTTGCGGACGCTCAAGCCCC
TCCCCCGG

Homology of Contig U35_46530 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59340.1	205	3e-73	protein\|RNA-binding region RNP-1, putative, expressed
Brachypodium v1_2	Bradi5g27270.1	202	1e-84
Arabidopsis v10	None