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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38021_PI390587928Hv_44K_v2AATGCAGCACTATCTGTTTTGACGAGAGAGGATTCCAGGATGTGTTCAGACGGCAATGAT693GeneList: darkorange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9971.0151.7021.6600.6170.521
Raw 47.04170.929109.660169.88223.14921.066



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36227726062e-241700 - 175910060 / 60plus ABC21653
Harvest21ABC183018523e-25694 - 75310060 / 60plus
Harvest35U35_225888523e-25694 - 75310060 / 60plus



Contig Sequence (852 bp)

>U35_22588 852 Hv_44K_v2
ATTGATGGTCTGATTCTGTTTGATCGGCCATAATGCAGTGCGCGAGCAGAGGATATTGCT
TCTGTTGCATCAACTTCGTCTGCTTTGGAGGTGCCAAATGGTGATACTGGCTTTGCAGAC
TTGGACGAAAAGATTTGGGAGCGGCTGTCTGAGAACTTCTGTAGTTATTGCTCACAACCT
TTGCCCAGTTTGCACTATGAATCACAAAAGGAGGCAGACATTGCTCTTTGCTCAGATTGC
TTCCATGATGCAAGATTTGTACCTGGGCACTCAAGCTTAGATTTTCAGAGAGTGGATGGA
ATGAAAGATGGATCAGACAATGATGGGGACAGCTGGACTCACGAGGAAACTTTACAGTTG
CTGGATGGCTTAGAGAAGTACAATGATAATTGGAATGCTATTGCTGAACATGTCGGAACA
AAGTCTAAGGCGCAATGTATTCACCATTTTATTCGCATTCCAGTGGAAGATGGTCTGTTA
GAGAGCATTGAAGTACCAGAAGCATCCGTTTCATCTAGAGTACAAAGCAATGGCTTTTCG
TATTCAAATTCCAACGGTGGCATTTCAGGTAGCTTTCCTCAAAGTAGCCAACCTGGACAA
CAGCTTCCATTTGTTAATTCTGCTAATCCAGTCATGTCACTGGTTGCATTTTTGGCCTCA
GCAGTAGGACCAAGAATAGCAGCATCCTGTGCAAATGCAGCACTATCTGTTTTGACGAGA
GAGGATTCCAGGATGTGTTCAGACGGCAATGATGTCACGGGTCATGCTGCTCGTCCAAAC
TATGATGCCTCATCACCTGTCTCTCCCGAAAACGTCAAATACGCTGCAATGTGTGGCTTG
TCAGCAGCGGCA



Homology of Contig U35_22588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g07730.18403e-117protein|SWIRM domain containing protein, expressed
Brachypodium v1_2Bradi4g41230.17797e-152
Arabidopsis v10AT1G21700.18073e-71| Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose nonfermenting 3C | chr1:7620156-7623978 REVERSE LENGTH=807