barSeed - Barley Seed Development Database

Probe CUST_3800_PI390587928

Source Contig U35_14356

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3800_PI390587928	Hv_44K_v2	GCGTCTTTGCTGCATTATCCTTTCATCATGCTGGCTTCTGCAATCTTAGTTGTTGGGCAA	687	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43986.1	1463	2e-24	716 - 775	100	60 / 60	plus	ABC01441 ABC01442 ABC01443 ABC36961 ABC37784 ABC52650
JLOC1	JLOC1_28468.1	2171	8e-25	742 - 801	100	60 / 60	plus
Harvest21	ABC50945	213	3e-25	89 - 148	100	60 / 60	minus
Harvest21	ABC29240	264	3e-25	47 - 106	100	60 / 60	plus
Harvest21	ABC01443	883	3e-25	689 - 748	100	60 / 60	plus	ABC01443
Harvest21	ABC01439	1461	3e-25	1050 - 1109	100	60 / 60	plus
Harvest21	ABC01441	468	1e-23	150 - 209	98	59 / 60	minus	ABC01441
Harvest35	U35_14358	1096	3e-25	689 - 748	100	60 / 60	plus
Harvest35	U35_14356	833	3e-25	688 - 747	100	60 / 60	plus

Contig Sequence (833 bp)

>U35_14356 833 Hv_44K_v2
GGAAGCCCACCGAATTCCTCGCGATTCCTCTCCCCTCGCCTCCTCGTCCTCCCCCTCCTA
GGGGATCGCCGGAGAGGAATCGCGACGAGGGCTTCCTCTTATCAGTTAATTAACCAAAGC
CATGGAGCACAAGGAGACGGGCTGCCAGTCACGGGAGGGTCCGATCCTTTGCGTCAATAA
CTGCGGCTTCTTTGGCAGCGCGGCGACCATGAACATGTGCTCCAAGTGCCACAAGGAGAT
GGCGATGAAGCAGGAGCAGGCCAAGCTGGCCGCCTCCTCTTTTGACAGCATCGTCAACGG
TGGCGATGCGGTGAAAGAGCACCTTGCTGCTGGCAGCACAGCGGTGGCAGTTGCTCACGT
TCAGGCGAAGGCGCTGATCACCGCACAGCCTGCTGACATCGCTGGTCCCAGCGAGGCGGC
CATGGAGAGCCCCAAAGGCCCAAGCCGGTGCAGCACCTGCAGAAAGAGGGTCGGGCTCAC
CGGATTCAACTGCCGGTGCGGGAACCTCTACTGCGCGACGCACCGCTACTCGGACAAGCA
CGAGTGCAAGTTCGACTACCGCGCTGCGGCCATGGACGCCATCGCCAAGGCCAACCCGGT
GGTGAAGGCGGAGAAGCTCGACAAGATCTAGGAAAGGGTCGGCAAAACAGAAGGTCCCAA
AATCAATCTGCGCTACCTCGTCATCGTGCGTCTTTGCTGCATTATCCTTTCATCATGCTG
GCTTCTGCAATCTTAGTTGTTGGGCAATCGTGATGCACGGCACACGCGCCTCGGCGGCAG
CCCCAGGTCCGAACGGTCTCCTTGTTGGCTATGTTGTGTAAGCTTTATTTATG

Homology of Contig U35_14356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41010.3	172	9e-96	protein\|zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed
Brachypodium v1_2	Bradi1g36050.1	162	2e-96
Arabidopsis v10	AT1G51200.1	173	5e-65	A20/AN1-like zinc finger family protein \| chr1:18985690-18986211 FORWARD LENGTH=173