barSeed - Barley Seed Development Database

Probe CUST_38000_PI390587928

Source Contig U35_22594

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38000_PI390587928	Hv_44K_v2	TTGCCAACGTTCTGACCGGTTCGCTCGAGTTTGAGTTGGGGAGTGTGAGTGTGAGTGGGA	30	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372172	1584	2e-24	32 - 91	100	60 / 60	minus	ABC19196
MLOC	MLOC_78011.1	625	2e-24	450 - 509	100	60 / 60	minus	None
JLOC1	JLOC1_51998.1	323	8e-25	148 - 207	100	60 / 60	minus
Harvest21	ABC17066	514	5e-23	25 - 80	100	56 / 56	minus
Harvest35	U35_22594	524	3e-25	31 - 90	100	60 / 60	minus

Contig Sequence (524 bp)

>U35_22594 524 Hv_44K_v2
AACACCAGCAGCCTGCGCCTCCTTCTCGTCTCCCACTCACACTCACACTCCCCAACTCAA
ACTCGAGCGAACCGGTCAGAACGTTGGCAATGGCGTCGCGGGCTGCTGCCGTCCTCCTCT
GCGCCCTGCTATGCATGACGGCCACGCACTCCATCGCCCAGTCGCCCGCGGCTGCGCCGG
CCGGCAACGCCCCGCCCAAGACGCCCACCGCCACCCCTGCCCCGCCTGCCGCCGACGCGT
CTGCACCGCCGACCACCACCCCGGCTGCCCCCGCGCCCAAGTCTTCCCAGGCCACCCCCG
CTCCGACCACTGCGCCAGCCACGCCGGCGCCGGTGAAGGCCCCGGCCACTCCCGCGCCGA
CAACTGCTCCCACCACGCCCGCGCCGGTGAAGGCCCCGGTTACCCCCGCGCCGACCACCA
CTCCTACCACACCGGCACCGGTGAAGGCCCCGGCCGCCCCCGCGCCGACCACCACTCCCG
CCGCACCAGCGCCGGTCCTCAAGGCCCCTGCCACCCCCGCCCCC

Homology of Contig U35_22594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None