barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37_PI415269222Hv_44K_v2TCAAGAAACTTACTCTGCGTGACGTGGAAATGGACGAGCTTTCTCTCAACAGATTCATTT718GeneList: darkturquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3070.5571.2261.7350.8651.110
Raw 4.84715.21631.53472.31012.07917.199



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_11832.120593e-22779 - 8379858 / 59plus ABC12730 ABC37281 ABC37585 ABC43800
JLOC1JLOC1_7884.120621e-22763 - 8219858 / 59plus



Contig Sequence (790 bp)

>TA44273_4513 790 Hv_44K_v2
CACGCCAGTCCCAAGCCCCGAACTCGCATAACCCTAGAAAAGCCATCGGCCTCGGGTCGC
TGCCGCCGTCGGCGTCTCCGACGGAGCTCTCCTCTTCCCTTGCCGATGAGAACGGAGCAC
CTCTCTGCCAGCCATCTCTTGTTTTGAAGCCTTTAGGTAAGAAAATATCTGAGGTAGGGT
TGCTATGGAGTCGTCAGGTGACGAACATGCCATGGAGAGTGATACTGAGACTGAAAGTGA
TCTGATCAGTGAGCTACCTGAAGACATCCTCCAGAAAATCCTGTCATGCGCGAGGATTAG
AACTGTCGTGCGGATGCGCAGGCTGTCTAGGAAGTGGAGGGAACTCTGTGAAAGCCTGCA
GTTCATACGCCTTGATTACAGAGATTTCGAACATTGGAAGGCCGAGAAGTTTGCTCGTTT
CGTTAACAACCTATTGCTTGTCCGTTGGAAAGTAGACTTGCACACGTTCCAGCTGCACTG
GGATCCTCATACTCCCCTGAACTGCAACGATGTCAGAATGTGGATTGGGTATGCGGTGAA
GCATAACGTTAAAGTGCTCGATGTGAAACTTTGTCTGTATGATAAGACCGTTTTACCTCC
TGGCATTTTCACCTGCCGCTCGCTTCAGGAGCTAAATTTGCAGTGGGGTAATGCTCCCCT
ACCGAGATTATGAACACACAGGGACTTGTGCTGCCTGACATAATCAATCTTCCTTCTCTC
AAGAAACTTACTCTGCGTGACGTGGAAATGGACGAGCTTTCTCTCAACAGATTCATTTGC
CGGNACCCTG



Homology of Contig TA44273_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g57920.14725e-70protein|OsFBL3 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2None
Arabidopsis v10None