- Probe CUST_3799_PI390587928
- Source Contig U35_14357
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3799_PI390587928 | Hv_44K_v2 | ATGAACATGTGCTCCAAGTGCCACAAGGAGATGGCGATGAAGCAGGAGCAGGCCAAGCTG | 359 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.302 | 0.432 | 1.187 | 2.201 | 1.127 | 1.362 |
| Raw | 454.875 | 1022.246 | 2463.463 | 7331.507 | 1293.607 | 1711.571 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_43986.1 | 1463 | 7e-23 | 237 - 296 | 98 | 59 / 60 | plus | ABC01441 ABC01442 ABC01443 ABC36961 ABC37784 ABC52650 |
| JLOC1 | JLOC1_28468.1 | 2171 | 4e-23 | 263 - 322 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01447 | 571 | 3e-25 | 227 - 286 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01440 | 740 | 3e-25 | 360 - 419 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01439 | 1461 | 3e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01443 | 883 | 1e-23 | 210 - 269 | 98 | 59 / 60 | plus | ABC01443 |
| Harvest21 | ABC41311 | 434 | 6e-22 | 61 - 120 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14357 | 740 | 3e-25 | 360 - 419 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14356 | 833 | 3e-25 | 209 - 268 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14358 | 1096 | 1e-23 | 210 - 269 | 98 | 59 / 60 | plus |
Contig Sequence (740 bp)
>U35_14357 740 Hv_44K_v2 GCCTCGCGATTCCTCTCCCCTCGCCTCCTCGTCCTCCCCCTCCTAGGGTTAGTACCCCCT CCCCTCCCCTCCCCCCGGATTCCACCGCGGGTCGACCTCTCCCCCCGGATCCGCCTCCAG ATTTAGGGCTCCGGCTCCGCCGATCCGGGCTCGTTCTTTTCCGCCGGAGCTTTTCCGTCG CTGATGATTTCTTGTTGTTGGGTCCGTGTGCAGGGATCGCCGGAGAGGAATCGCGACGAG GGCTTCCTCTTATCAGTTAATTAACCAAAGCCATGGAGCACAAGGAGACGGGCTGCCAGT CACGGGAGGGTCCGATCCTTTGCGTCAATAACTGCGGCTTCTTTGGCAGCGCGGCGACCA TGAACATGTGCTCCAAGTGCCACAAGGAGATGGCGATGAAGCAGGAGCAGGCCAAGCTGG CCGCCTCCTCTTTTGACAGCATCGTCAACGGTGGCGATGCGGTGAAAGAGCACCTTGCTG CTGGCAGCACAGCGGTGGCAGTTGCTCACGTTCAGGCGAAGGCGCTGATCACCGCACAGC CTGCTGACATCGCTGGTCCCAGCGAGGCGGCCATGGAGAGCCCCAAAGGCCCAAGCCGGT GCAGCACCTGCAGAAAGAGGGTCGGGCTCACCGGATTCAACTGCCGGTGCGGGAACCTCT ACTGCGCGACGCACCGCTACTCGGACAAGCACGAGTGCAAGTTCGACTACCGCGCTGCGG CCATGGACGCCATCGCCAAG
Homology of Contig U35_14357 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g41010.3 | 172 | 1e-86 | protein|zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g36050.1 | 162 | 3e-87 | |
| Arabidopsis v10 | AT1G51200.1 | 173 | 5e-56 | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173 |