barSeed - Barley Seed Development Database

Probe CUST_37999_PI390587928

Source Contig U35_22595

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37999_PI390587928	Hv_44K_v2	AACAGAGGGGAATGAGGTTTGCATCAGCTACTTCGCGGCCAATTGGAGGTACGCTGACCG	764	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61570.1	1678	2e-24	777 - 836	100	60 / 60	minus	ABC13303
JLOC1	JLOC1_40235.1	1832	8e-25	797 - 856	100	60 / 60	plus
Harvest21	ABC21283	663	3e-25	595 - 654	100	60 / 60	plus
Harvest35	U35_22595	833	3e-25	765 - 824	100	60 / 60	plus

Contig Sequence (833 bp)

>U35_22595 833 Hv_44K_v2
AGTTGCTCTTCCTATTCCTCAGCCGCCGCCGGAATAGCACCGCCAAGCATGTCCGGCGAC
ACGCTCAGAGTAGCCGAGCTCCCGGGCCGCGGCCGCGCGCTCCTCGCCGCCCGCGACATC
CTCGAGGGCGAGGTGCTCCTGTCGGAATCGCCCATCCTCCTCTACCCGTCCTCGCTCGCC
TCCCTCTCCTCCTACTGCTCCGCCTGCTTCCGCTCGCTCCCGCCGCCGCCCCACACCCCC
TGCCCATCCTGCCGCGCCGCCGCCTTCTGCTCCCCTGCCTGCGCCGCCGCCTCCCACCCG
CGCCTCCTCTGCGCCGCGCTCTCCAGCGGCCTCGCCGCCGCCCCCGAGGCGCACCAGGAG
CCCCTCCTCTTCCTCCTCTCGGCCTACTCGCTCCAGGAGCCCTCTCTCAGCGCCATCCTC
TCTCTCTCCTCGGCTCCGCAGGGTCCCTCCCCGAGCCAGCAGCAGGAAGCCGCGAGCCTC
CACGCCGCGGTGGCGTCGGTGGCGCCGCCGCACATGCTGCCCGCTGGCTTCTCTCTGGAC
CTCACGGCGGCCCTCCTCTCCAAGGACCGGACCAACAGCTTCTCCATCCTGGAGCCGTAC
CGCCCCGACGTGCCGCTGGAGCTCCGCAAGGCGCGGTGCTGCGCGGTGTACCCGCGCGCC
TCACTGCTCAACCACGACTGCCTGCCCAATGCTTGCCACTTCGATTATGCCGACAGGCCG
GGGCCAGGGAACACGGACATGGTCGTGCGCGCTCTCCATGGCATAACAGAGGGGAATGAG
GTTTGCATCAGCTACTTCGCGGCCAATTGGAGGTACGCTGACCGGCAACGCAG

Homology of Contig U35_22595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g10470.2	393	1e-74	protein\|histone-lysine N-methyltransferase ASHR2, putative, expressed
Brachypodium v1_2	Bradi3g17710.1	390	2e-76
Arabidopsis v10	None