barSeed - Barley Seed Development Database

Probe CUST_37998_PI390587928

Source Contig U35_22596

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37998_PI390587928	Hv_44K_v2	CGGAAGTGCTGGAACAAATGAGAAAGTTGAACTCCTAAAAGATAAGTTTGGATTCGATGC	57	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370453	1200	2e-24	650 - 709	100	60 / 60	plus	ABC34597 ABC43043
MLOC	MLOC_72476.2	2955	7e-23	2899 - 2955	100	57 / 57	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.3	3514	7e-23	3458 - 3514	100	57 / 57	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.4	3347	7e-23	3291 - 3347	100	57 / 57	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.5	3041	7e-23	2985 - 3041	100	57 / 57	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.13	793	3e-22	738 - 793	100	56 / 56	minus	ABC34597 ABC43043
MLOC	MLOC_72476.11	1849	3e-22	1794 - 1849	100	56 / 56	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.14	1185	3e-22	1130 - 1185	100	56 / 56	minus	ABC34597 ABC43043
JLOC1	JLOC1_48202.7	2747	4e-23	1 - 57	100	57 / 57	plus
JLOC1	JLOC1_48202.6	2843	4e-23	1 - 57	100	57 / 57	plus
JLOC1	JLOC1_48202.5	3235	4e-23	1 - 57	100	57 / 57	plus
JLOC1	JLOC1_48202.4	2929	4e-23	1 - 57	100	57 / 57	plus
JLOC1	JLOC1_48202.3	3321	4e-23	1 - 57	100	57 / 57	plus
JLOC1	JLOC1_48202.2	2800	4e-23	1 - 57	100	57 / 57	plus
Harvest21	ABC43043	625	3e-25	509 - 568	100	60 / 60	minus	ABC43043
Harvest35	U35_22596	626	3e-25	58 - 117	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_22596 626 Hv_44K_v2
TGGAGCAGTTGGTCAGATTGTCGGTCAACTTGCAAAGCTCCATGGCTGCTATGTTGTCGG
AAGTGCTGGAACAAATGAGAAAGTTGAACTCCTAAAAGATAAGTTTGGATTCGATGCAGC
TTTTAATTACAAAGAGGAGCCTGACTTGACTGCAGCACTAAAAAGGTACTTTCCTGAAGG
TATCGACATCTACTTCGAGAATGTAGGCGGACCAATGCTAGATGCTGTACTCCTTAACAT
GCGGATGCATGGTCGCATAGCAGTATGTGGGATGGTCTCCCAGCACGGCATGACTGATCC
TGCAGGGATCCACAACCTCTTTTGCCTGGTGCCGAAACGGATCAGTATGAAGGGCTTCAT
CCAGAGTGATTACATCAACTTATTCCCACAGTTCCTCGATTACATGACCAAGCATTACAA
GGATGGCAAGATTGCATATGTGGAAGACGTGAGCATTGGGCTAGAGAATGCGCTAGCTGC
CTTTGTTGGTCTATTCAGTGGTAAAAATGTGGGCAAACAAGTCGTGTACGTGTCACAAGA
GTGAAGTACATCTACATTCTGATGAATATTACGAATATCTCATGATTCAAATAATAATAA
AGATTGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66720.1	360	6e-110	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi2g57440.1	356	3e-114
Arabidopsis v10	AT3G03080.1	350	2e-82	Zinc-binding dehydrogenase family protein \| chr3:698530-700278 REVERSE LENGTH=350