barSeed - Barley Seed Development Database

Probe CUST_3798_PI390587928

Source Contig U35_14358

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3798_PI390587928	Hv_44K_v2	ATGGTATTGTGGCTTTCGCATTTTGGCTAGCACTCTGTAATGTACTGCTGTTTCCTCCTG	861	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43986.1	1463	2e-24	889 - 948	100	60 / 60	plus	ABC01441 ABC01442 ABC01443 ABC36961 ABC37784 ABC52650
JLOC1	JLOC1_28468.1	2171	8e-25	915 - 974	100	60 / 60	plus
Harvest21	ABC01439	1461	3e-25	1223 - 1282	100	60 / 60	plus
Harvest21	ABC36961	452	1e-23	101 - 160	98	59 / 60	minus	ABC36961
Harvest21	ABC37784	458	6e-22	124 - 183	97	58 / 60	minus	ABC37784
Harvest35	U35_14358	1096	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (1096 bp)

>U35_14358 1096 Hv_44K_v2
TCGAAGCCCACCGAATTCCTCGCGATTCCTCTCCCCTCGCCTCCTCGTCCTCCCCCTCCT
AGGGGATCGCCGGAGAGGAATCGCGACGAGGGCTTCCTCCTATCAGTTAATTAACCAAAG
CCATGGAGCACAAGGAGACGGGCTGCCAGTCACGGGAGGGTCCGATCCTTTGCGTCAATA
ACTGCGGCTTCTTTGGCAGCGCGGCGACCATGAACATGTGCTCCAAGTGCCACAAGGAGA
TGGCAATGAAGCAGGAGCAGGCCAAGCTGGCCGCCTCCTCTTTTGACAGCATCGTCAACG
GTGGCGATGCGGTGAAAGAGCACCTTGCTGCTGGCAGCACAGCGGTCGCAGTTGCTCACG
TTCAAGCGAAGACGCTGATCACCGCACAGCCTGCTGACATCGCTGGTCCCAGCGAGGCGG
CCATGGAGAACCCCAAAGGCCCAAGCCGGTGCAGCACCTGCAGAAAGAGGGTCGGGCTCA
CCGGATTCAACTGCCGGTGCGGGAACCTCTACTGCGCGACGCACCGCTACTCGGACAAGC
ACGAGTGCAAGTTCGACTACCGCGCTGCGGCCATGGACGCCATCGCCAAGGCCAACCCGG
TGGTGAAGGCGGAGAAGCTCGACAAGATCTAGGAAAGGGTCGGCAAAACAGAAGGTCCCA
AAATCAATCTGCGCTACCTCGTCATCGTGCGTCTTTGCTGCATTATCCTTTCATCATGCT
GGCTTCTGCAATCTTAGTTGTTGGGCAATCGTGATGCACGGCACACGCGCCTCGGCGGCA
GCCCCAGGTCCGAACGGTCTCCTTGTTGGCTATGTTGTGTAAGCTTTATTTATGGTCGTC
TCTCTGCGCGGCGGAACGGTAATGGTATTGTGGCTTTCGCATTTTGGCTAGCACTCTGTA
ATGTACTGCTGTTTCCTCCTGGTGTCCGTCTGTCTGTCTGTCTGTCTTACAGTCGCAACC
GGTAAGTAATGGTATCGAGTAAGCGTCGTCGTCTGTTAAAAAAAAAAAAAAAAAAAAAAC
CTTGTCAAAAAAAAAAAAAAAACTTCCTGATATCCACCAGAAGATAGTAGTTCTGTGTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_14358 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41010.3	172	5e-96	protein\|zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed
Brachypodium v1_2	Bradi1g36050.1	162	1e-96
Arabidopsis v10	AT1G51200.1	173	1e-64	A20/AN1-like zinc finger family protein \| chr1:18985690-18986211 FORWARD LENGTH=173