- Probe CUST_37965_PI390587928
- Source Contig U35_34590
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37965_PI390587928 | Hv_44K_v2 | TCGTTTACTTGTATCAATGGATCAGTTACTTACAGTTACAGTACAGGTGCAGTCAAAAAA | 125 | GeneList: orangered4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.890 | 3.469 | 1.412 | 0.795 | 0.359 | 0.321 |
| Raw | 56.296 | 105.000 | 38.112 | 34.163 | 3.269 | 3.950 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_34670.1 | 1049 | 4e-23 | 929 - 985 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_34590 | 196 | 3e-25 | 126 - 185 | 100 | 60 / 60 | plus |
Contig Sequence (196 bp)
>U35_34590 196 Hv_44K_v2 GGGGGAACAAAAAATGCACGAAAGGCAGTTCTGATCGGCGATCAGACTGTATGTACGTAT TTCAATCTGGTGCATCACTAACCTGTGCTACTGCTAGCGCTCTGTGGTAGCGAGCGTCAC TGGCGTCGTTTACTTGTATCAATGGATCAGTTACTTACAGTTACAGTACAGGTGCAGTCA AAAAAAAAAAAAAAAA
Homology of Contig U35_34590 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |