- Probe CUST_37953_PI390587928
- Source Contig U35_46573
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37953_PI390587928 | Hv_44K_v2 | GTTTTGTAAACGCTTCCCCCTTTTTGTGTTTTGTTTGCGGTCCACATCCCCATCATATTT | 65 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.511 | 1.151 | 1.179 | 0.748 | 0.367 | 0.231 |
| Raw | 3957.767 | 4552.890 | 4270.467 | 4014.013 | 734.102 | 501.442 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC46843 | 368 | 3e-25 | 66 - 125 | 100 | 60 / 60 | minus | ABC46843 |
| Harvest35 | U35_46573 | 368 | 3e-25 | 66 - 125 | 100 | 60 / 60 | minus |
Contig Sequence (368 bp)
>U35_46573 368 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGCAAATACTCCACATTCCATGATCCCACCCCAACAATTCCTA CAAAAAAATATGATGGGGATGTGGACCGCAAACAAAACACAAAAAGGGGGAAGCGTTTAC AAAACTATCCAGGGCTCCAGGGCGAACCAATAAATCTCATAAAAACACAGCACGGGGGGC ATTGCCCCCCGGCCAACAAAGCTTAAAAACCAAACAACCATGGCATATGTATCATCATCC TACTCCTTGTACTTCATGCTCTCCAACGTGAAACCGGGCATGTCAAAAGAAAAGGCAAAC TTCTCCACCTCCACCTTGAGGGTCTCAATGTCCTTGTTGGTCACCAAGCCCTTGGAAAAA TCCTTGAA
Homology of Contig U35_46573 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |