barSeed - Barley Seed Development Database

Probe CUST_37937_PI390587928

Source Contig U35_5502

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37937_PI390587928	Hv_44K_v2	GGGCTATGCTCAATTGGTTTATCCAATGTGGTGCAATCACTAGCCATTGAGTTTAAAAAA	1236	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.346	1.285	1.072	0.983	0.377	0.492
Raw	468.951	712.541	516.724	754.876	100.743	140.404

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_5502	1307	3e-25	1237 - 1296	100	60 / 60	plus

Contig Sequence (1307 bp)

>U35_5502 1307 Hv_44K_v2
AGGGCTAGGCAGCATTTGCGCCAGCAGTACGATGAGTTATTCCCAATGCTATCCACCAAG
TTTCCTGAGATATTCAACAAGACATATTCTCTTGGGACAATTTTCTGTGGGCATGTGAAT
TATGGTATTCTAATAGTATGATGGTTGTTTTAAGTAGTGGGAAATAACAACTTGCTTGAT
TCCTGTTGCTGGACTTATGAACCACTCGGTGACTCCACATATTCTTAACTATGGCCGAGT
AGATCAAGCTACAAAGTCTTTAAAGTTTCCTTTGTCGAGACCTTGCGAAGCAGGAGCCCA
ATGTTTCCTCAGTTATGGGAAACATCCAGGGTCACATCTAATTACCTTCTATGGCTTCCT
ACCAAGAGAAGACAACCCTTACGATGTTATACCTTTGGATCTTGATACGTCTGTTCATGA
GGAGGACGGCACCACCCAGTCTGTGAGTACAAGTGTAACCAATCATATGGTTCGTGGGAC
ATGGTGGTGCAGATTACAAGGACCTCCCACATATGGCCTGCCTCCGCCCTTGTTGTCTCA
TCTCCGTGCTGCTCTAAACTGTGATCACCACGAATCAACGCCAGAGGCTGATATAAAGGA
AAATGACAGGATGGTGCTGGAAACACTCGTTAGCATATTTACTCCGATGCTTGAAGGCTT
AGGCGAGGCAGACGACTACAACCGGGAGAGTGCGAGTTGGGACGTTGTGCTGGCGCTGGA
CTACAAGGATCTTCAGAGAAGGATAATTTTGTCCATTGTTACTTCTTGTGGCTCAGGATT
GGCAATGCTTGATTCCTAGTTGGAAGTGTTTCTTTCATCACTAATTGAATAAGCTGAGAC
CACACTGGAACCAGAAGTAGGTCGGGAGTACCTTCCATAGCTGACATGCGGACGGTGGTG
AAGCTGTTGAACACGGAAGTACTTCGTTGCAGTGCAATTCGCCCTGGTGGTTTAGGAGGA
TGCAAGGGCTGGCACGAAGACCACACATCCCAACTGAAGATGCTCCAACGTGATATATTT
GATCCGCCAACAATTACGTGGGCGAATTTCAGGCATCAGTTTGTGGCTTGAAATTTTAAG
CTAGCTACTCCAGATTGTTGATGCAAACTTTCCTTTGGCAGAAGAAAGCTACTGTGGTAT
CTTTGAGCTAATTTATTGTGATGGAGCAATGTCGCTGACCTATAAAGCTGCCTGTTCACC
TTGTTGATCAGAATGCCTTACTTCTGACCTGTGTTTGGGCTATGCTCAATTGGTTTATCC
AATGTGGTGCAATCACTAGCCATTGAGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5502 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g14660.1	545	1e-110	protein\|SET domain containing protein, expressed
Brachypodium v1_2	Bradi3g18940.1	542	5e-115
Arabidopsis v10	AT2G18850.1	543	4e-61	SET domain-containing protein \| chr2:8160788-8163479 FORWARD LENGTH=543