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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37927_PI390587928Hv_44K_v2TTGTAACAACTCCTGAGATTGCTAGCGTGATGGCTCAGAAGATCCAGTTCAACACATTCG1150GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1050.2340.9591.8081.2031.493
Raw 67.793230.965859.3682558.618597.073804.441



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_17573.311012e-24459 - 51810060 / 60plus ABC05255
MLOCMLOC_17573.218432e-241170 - 122910060 / 60plus ABC05255
MLOCMLOC_17573.120312e-241380 - 143910060 / 60plus ABC05255
JLOC1JLOC1_12132.218938e-251240 - 129910060 / 60plus
JLOC1JLOC1_12132.121828e-251328 - 138710060 / 60plus
Harvest21ABC0525517923e-251102 - 116110060 / 60plusABC05255
Harvest35U35_196718423e-251151 - 121010060 / 60plus



Contig Sequence (1842 bp)

>U35_1967 1842 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGGTGCCAATCCCACACTCCACTCTCCTTCCCACCCCACCT
AACCACCCCCGAGCTAATCCAGCTCCGTCTCCCTCGCTGTTCTGTTGTAGAGCACCACAG
CTCCTGCCCCTAGCTAACTGACCCGGGCTCATGGCCGCCTCGCTGCTTCGCCGCGCGTCC
GCCGGCCGCGGGCGGTGTCCCTCGCCGGCGGAGGCGCTGCGGAGGCTGGTGTCCTCGGAG
GCGGCGCCGGAGCAGGCCCTGCCGCGGCCTCTGCCGGAGATGCCGCCGTTCGAGCACCGG
CCGAGCCCGTACGCCGGGATGGGCGGCGCGGAGATCCTCGAGAAGCGGAAGAAGTTCCTC
GGCCCCTCCCTCTTCTACTACTACCAGAAGCCGCTCAACATCGTCGAAGGGAAGATGCAG
TACCTATACGACGAACAAGGCAGGAGATACCTTGATTGCTTCGGAGGCATCGTCACGGTG
TCATGTGGCCATTGCCACCCTGATATCGTCAACGCCGTGCAGGAGCAGACCAAGTTGCTT
CAGCACACCACCACCATATACTTGCATCATGCCATAGTCGAGTTTGCCGAGGCGCTTGCA
TCCAAGATGCCAGGCAATCTCAAGGTTGTGTACTTCGTCAATTCCGGGACGGAAGCGAAT
GAATTGGCAATGTTGATGGCTCGGCTGTACAGCGGGAATCTCGGTATGGTTGCTTTGAGA
AATGGATATCACGGTGGGAGTGCTGGAACAATAGGTCTCACCGGTTTGCAGACGTGGAAG
TACCCGATTCCTCAGGGTGAGATTCATCATGTCATGAATCCGGATCCTTACCGTGGAGCT
TTTGGGTCTGATGCTGCAGCTTATGCCAGGGAAGTCGAAGAACATATAAATTTTGGCAGT
TCAGGAAGGGTTGGAGGTTTTATCGCAGAAACTTTCCAGGGTGTAGGAGGTACTGTTGAA
CTAGCTCCTGGATACCTGAAGTCAGTCTATGATACTGTCCGGAAGGCGGGTGGTGTCTGT
ATAGCTGATGAAGTCCAAAGTGGTTTTGGCCGTACTGGAAGTAACTACTGGGGATTCCAG
ACGCAGGACGTCATCCCTGACATCGTAACGATGGCAAAGGGAATCGGTAATGGTCTACCA
CTCGGTGCAGTTGTAACAACTCCTGAGATTGCTAGCGTGATGGCTCAGAAGATCCAGTTC
AACACATTCGGTGGGAACCCAGTCTGTTCTGCTGGTGGATTGGCTGTGCTTAAGGTTCTT
GACAAGGAGAAACGCCAGGCGCATTGCGCAGATGTCGGCACTCACTTGGTGGAACGTCTG
AAGTCGCTTCAGCAGAAGCATGAAATCATTGGAGATGTCAGAGGAAGAGGGCTGATGCTT
GGGGTGGAGCTCGTCACTGACAGGACGGAGAAGACACCGGCCAAGGCTGAGACCGCTGTT
CTGTTTGAGAAACTCAAAGATCTCGGCGTTCTACTCGGCAAAGGCGGTCTGCACGGCAAC
GTCTTCAGGATAAAACCACCGATGTGCTTCTCCAAGGACGACGCAGATTTCTTGGTGGAC
GCCATGGACTACGCCATGTCAGGGTTCTGAGGACCATGAACGTTCTCGCGCCTGCTCCTG
AACAGTCGCCGGGCGGCGGCGCGGAATGCATGAATGCTGGTAGCATGGTACGTGCTCATC
GCTGGGATGCGTCACTGCGTGTTTACACGCAACGCATGTGTATGTAATGCGTGTTTGCAC
TGCTTGCCCGTGTGGCTATATGGTCGTGATGGTGGAACACAACCCCTACACAGGGATGAA
TAAATGAAGGGGGGAAAGCATCAAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_1967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g07570.44870.0protein|aminotransferase, putative, expressed
Brachypodium v1_2Bradi1g73120.14750.0
Arabidopsis v10AT4G39660.14760.0| Symbols: AGT2 | alanine:glyoxylate aminotransferase 2 | chr4:18406797-18409262 FORWARD LENGTH=476