- Probe CUST_37922_PI390587928
- Source Contig U35_1972
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37922_PI390587928 | Hv_44K_v2 | TGGAAGCGCAAGTCTGAACAGTATCTGGCAGACAGTGGAGTTCCTTATACAATCATAAGG | 582 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.137 | 0.270 | 0.959 | 1.943 | 1.242 | 1.483 |
| Raw | 192.411 | 585.794 | 1846.400 | 6014.593 | 1326.801 | 1721.531 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_2934.2 | 1310 | 2e-24 | 405 - 464 | 100 | 60 / 60 | minus | ABC06668 |
| MLOC | MLOC_2934.1 | 1195 | 2e-24 | 432 - 491 | 100 | 60 / 60 | minus | ABC06668 |
| JLOC1 | JLOC1_1750.1 | 1286 | 8e-25 | 734 - 793 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06669 | 1028 | 3e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06668 | 1067 | 3e-25 | 583 - 642 | 100 | 60 / 60 | plus | ABC06668 |
| Harvest35 | U35_37387 | 643 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1973 | 1076 | 3e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1972 | 642 | 3e-25 | 583 - 642 | 100 | 60 / 60 | plus |
Contig Sequence (642 bp)
>U35_1972 642 Hv_44K_v2 CAGCTTGTTCTCTCGCTCGCCGCTTCTCGCGTGAAACATTGGCAGTTGGCAGCACAAGCA TCGTGACCTTCAGTCTGCGGCCCGCGACCAGCCTGCGCCACCAGCTCCCTGCCAGGTGCC ATGGCCGCGCCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGTCAAATC GTGTTCAACAAGCTCCGGGAGAGATCCGACCAGTTCGCGGCGAGGGGCCTGGTGAGGTCC GAGGAGAGCAAGCAGAAGATCGGGGGAGCCGACGACGTCTTCGTTGCCGACATCAGGGAG GCGGGCCACCTCGCGCCCGCCGTCCAGGGCGCCGACGCGCTCGTCATCCTCACCAGCGCC TCCCCCAAGATGAAGCCCGGGTTCGACCCCACCAAGGGCGGCCGCCCCGAGTTCTACTAC GACCACGGAGCCTACCCTGAGCAGGTGGACTGGATTGGGCAGAAGAATCAGATCGATGCC GCCAAAGCAGCCGGTGTGAAGCACATAGTGTTGGTTGGATCCATGGGGGGGACAAACCCC AACCATCCTCTCAACAGCCTTGGCAATGGCAACATATTGGTCTGGAAGCGCAAGTCTGAA CAGTATCTGGCAGACAGTGGAGTTCCTTATACAATCATAAGG
Homology of Contig U35_1972 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g60740.1 | 258 | 1e-106 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g03610.1 | 258 | 6e-112 | |
| Arabidopsis v10 | AT2G37660.1 | 325 | 4e-97 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:15795481-15796977 REVERSE LENGTH=325 |