barSeed - Barley Seed Development Database

Probe CUST_37921_PI390587928

Source Contig U35_1973

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37921_PI390587928	Hv_44K_v2	AATAAACTCCTGCCGATGCATGGAGATTCGAGAAGCAAAATCTGTTCTATTTTCCTGAAA	1002	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2934.1	1195	2e-23	2 - 59	100	58 / 58	minus	ABC06668
JLOC1	JLOC1_1750.1	1286	1e-23	1166 - 1223	100	58 / 58	plus
Harvest35	U35_1973	1076	3e-25	1003 - 1062	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_1973 1076 Hv_44K_v2
GAGGCTTCCCTGCTCTCGCCGCTTCTCGCGTGAAACATTGGCAGTTGGCAGCACAAGCAT
CGTGACCTTCAGTCTGCAGCCTGCGCCACCAGCTCCCTGCCAGGTGCCATGGCCGCGCCC
CGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGTCAAATCGTGTTCAACAAG
CTCAGGGACAGATCCGACCAGTTCGCGGCGAGGGGCCTGGTGAGGTCCGAGGAGAGCAAG
CAGAAGATCGGGGGAGCCGACGACGTCTTCGTCGCCGACATCAGGGAGGCGGACCACCTC
GCGCCCGCCGTCCAGGGCGCCGACGCGCTCGTCATCCTCACCAGCGCCTCCCCAAAGATG
AAGCCCGGGTTCGACCCCACCAAGGGCGGCCGCCCCGAGTTCTACTACGACCACGGAGCC
TACCCTGAGCAGGTGGACTGGATTGGGCAGAAGAATCAGATCGATGCCGCCAAAGCAGCC
GGTGTGAAGCACATAGTGTTGGTTGGATCCATGGGGGGGACAAACCCCAACCATCCTCTC
AACAGCCTTGGCAATGGCAACATATTGGTCTGGAAGCGCAAGTCTGAACAGTATCTGGCA
GACAGTGGAGTTCCTTATACAATCATAAGGCCTGGTGGTCTGCAAGACAAGGATGGGGGA
GTGAGGGAGCTGATTGTCGGGAAGGATGATGAGCTTCTCCAGACTGACACTAAGGCGATT
CCTAGGGCTGATGTGGCCGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGGTGAAGTTC
AAGGCATTCGATTTGGCTTCGAAACCTGAAGGCGAGGGCACCCCGACTAAAGATTTCAAA
GCGCTGTTCTCCCAGGTCACAGCCCGGTTTTGAGTCATCAGTCCAGGAGTATACTTGCAT
TTCTAGCTTACAAGGATCTTACTGTATGAGTGTGTAAGCTTTTGTGTATTATGGAGGTGC
TGGCTGGTATAATTGCACAATCGTTTTATCAATAATGCTGAAAATAAACTCCTGCCGATG
CATGGAGATTCGAGAAGCAAAATCTGTTCTATTTTCCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60740.1	258	1e-163	protein\|expressed protein
Brachypodium v1_2	Bradi1g03610.1	258	5e-170
Arabidopsis v10	AT2G37660.1	325	2e-144	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:15795481-15796977 REVERSE LENGTH=325