barSeed - Barley Seed Development Database

Probe CUST_37917_PI390587928

Source Contig U35_1977

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37917_PI390587928	Hv_44K_v2	GCGGAAAATGTCATCGTCATTCCGTTTATTTGTTTTAGTTTTGACACGTACGTATAAATG	1184	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.932	2.294	0.600	0.534	1.090	0.971
Raw	18.453	23.987	3.537	4.480	2.874	2.775

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54267.1	2297	2e-24	33 - 92	100	60 / 60	minus	ABC13318
JLOC1	JLOC1_34923.1	2257	8e-25	2102 - 2161	100	60 / 60	plus
Harvest21	ABC13318	1212	3e-25	1128 - 1187	100	60 / 60	plus	ABC13318
Harvest35	U35_1977	1332	3e-25	1185 - 1244	100	60 / 60	plus

Contig Sequence (1332 bp)

>U35_1977 1332 Hv_44K_v2
CATCAACGAGGATACACTGCCCTACGGTGCGGCCATGCAAGCATCGTTGGCTGCTCGCTA
TCTGCTTGAGCACCAGCTCGTTACCGCTGCTAAGGTGATCTACATCAAGGCCGGGGCGTA
CATGGAGAACGTGGAGGTGGGGAAGAACCACAAGAACCTCATGTTCATGGGCGACGGAAT
GGGCAAGACGGTGATCAAGGCCAGCCTCAACGTCGTCGACGGCTCCACCACCTTCCGCTC
CGCCACAGTCGCTGTGGTGGGCAACAACTTTCTAGCCCGCGACCTGACAATCGAGAACGC
GGCCGGCCCGTCCAAGCACCAGGCGGTGGCGCTCCGCGTCGGCGCCGACCTCTCGGCCTT
CTACCGGTGCAGCTTCGTGGGCTACCAGGACACCCTCTACGTGCACTCCCTCCGTCAGTT
CTTCCGCGAGTGCGACATCTACGGCACCATCGACTTCGTCTTCGGCAACTCCGCCGCCGT
GCTCCAGAGCTGCAACCTCTACGCCCGCCGGCCCCTCCCCAACCAGAGCAACATCTACAC
GGCGCAGGGCCGGACGGACCCCAACCAGAACACCGGCATCTCCATCCAAAAGTGCAAGGT
GGCGGCGGCCTCCGACCTCGCCGCCGTGCAGTCCAGCTTCAAGACCTACCTTGGCCGGCC
GTGGAAGCAGTACTCCCGCACCGTCTTCATGCAGTCGGAGCTCGACAGCGTCGTCAACCC
CGCCGGCTGGCTCGCGTGGGACGGCACCTTCGCGCTCGACACGCTCTACTACGGCGAGTA
CCAGAACACGGGACCCGGCGCCGGCACGTCCGGCAGGGTGACGTGGAAGGGGTACCGCGT
CATCACCAGCGCATCGGAGGCCAGCACCTTCACGGTGGGCTCCTTCATCGATGGCGACGT
CTGGCTCGCCGGCACATCCATCCCATTCTCCGCCGGGCTGTGACCGACCAATTCTTCTTC
TATCATCATATCATATAAAGCACCCAATTCGTCCTGAGTTCGAGTACATCCAATCCAATA
CCCCAGTGGAGCGGAGGGGCACCTGCCTGATTCATCTTATTAGTTTTGTGGCATTCTTTT
CACCGCAATAATTAAGTTTGGTGGCTTATGTGTTCATTTGGTTATACTTATATTGTTTAT
TTATGTGGTTTTTTGTTAACTAGCCAGGTGCCTCGGCCAATTGTGCGGAAAATGTCATCG
TCATTCCGTTTATTTGTTTTAGTTTTGACACGTACGTATAAATGTAAACTATATATTGTG
CTATCTAAGAAGTAATACTTCCTTATAAAGATGTATATTATTGGGGCTTCACAATAAAAA
AAAAAAAAAAAA

Homology of Contig U35_1977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21034.1	427	0.0	protein\|pectinesterase, putative, expressed
Brachypodium v1_2	Bradi2g11860.1	562	1e-176
Arabidopsis v10	AT3G14310.1	592	7e-130	\| Symbols: ATPME3, PME3 \| pectin methylesterase 3 \| chr3:4772214-4775095 REVERSE LENGTH=592