barSeed - Barley Seed Development Database

Probe CUST_37913_PI390587928

Source Contig U35_801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37913_PI390587928	Hv_44K_v2	GATACTTTGCTGAGTTTGTAACTGTTACCATCCTTTTTTGAAAAAGTGCACTTGTACCTC	470	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44788.1	2502	2e-24	2213 - 2272	100	60 / 60	plus	ABC02602 ABC02607
JLOC1	JLOC1_29054.1	2429	8e-25	2216 - 2275	100	60 / 60	plus
Harvest21	ABC02602	596	3e-25	68 - 127	100	60 / 60	minus	ABC02602
Harvest21	ABC02599	1272	3e-25	1210 - 1269	100	60 / 60	plus
Harvest35	U35_16140	1081	3e-25	923 - 982	100	60 / 60	plus
Harvest35	U35_801	597	3e-25	471 - 530	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_801 597 Hv_44K_v2
CAGCATGGAGTACACTGAGGTGCTGAAGCTGCGTGGGCTCCCTTACTCCGCCACCATAGA
GGACATCATCAAGTTCTTTGTGGAGTACGAGCTGACGGAGGATAACGTGCACATTGCCTA
CCGCTCGGACGGGAAGGCCACTGGCGAGGCCTTTGTGGAGTTCCCGACGGCCGAGGTTGC
AAAGACTGCCATGTGCAAGGATAAGATGACCATCGGTACCAGGTACGTGGAGCTGTTTCC
ATCGACCCCTGAGGAGGCGAGCAGGGCGAAGCCGCGGGGCAGGCACTGAACGCAGCTTAC
CACAAGACGCTGAACCCTGGGTGTCAGAAGGGCATAATCTTGTTCCGGTTTAGCCTTTGT
GCTCTCATCATGCTTAAAAATTGTATCTCTGTTGGATTGTGTTAGTTCGCGCTCCTGTTT
CTGATGAGACGGTCTCGTACTGCGTCTTCAGGGTAAAAAACTGTGTATGAGATACTTTGC
TGAGTTTGTAACTGTTACCATCCTTTTTTGAAAAAGTGCACTTGTACCTCAAAAAAAAAA
AAAAAAATTATTTCTTTGTGATGTGATTTGAGATTTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g03890.1	299	4e-53	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g01310.1	293	4e-55
Arabidopsis v10	None