barSeed - Barley Seed Development Database

Probe CUST_37911_PI390587928

Source Contig U35_1980

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37911_PI390587928	Hv_44K_v2	AGTTTGCGGTGCTATTGTTATTGCAGTTGCCAGGGGAGTTGAGAAATTGCAATATCTCAA	575	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.420	0.764	1.009	1.680	0.867	1.314
Raw	19.095	57.074	62.743	172.665	30.622	49.689

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375937	1406	2e-24	589 - 648	100	60 / 60	plus	ABC05550
MLOC	MLOC_20766.1	3002	2e-24	809 - 868	100	60 / 60	minus	ABC05550
JLOC1	JLOC1_14394.2	1283	8e-25	434 - 493	100	60 / 60	plus
JLOC1	JLOC1_14394.1	1427	8e-25	434 - 493	100	60 / 60	plus
Harvest21	ABC05549	1021	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_1980	1050	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_1980 1050 Hv_44K_v2
CTTCTCGGCGTCTCCGTCCAAATCCGAACCTCCTCCAGGGTCCAAACCCCAACCTAGGAA
ATGGAGGCGCTCGTGGTGCGGAAGCTCGGCGATCCAACGCTGCCGCCCGGCGGCGAGGAA
TCTCCGTTTGCGGCAGTCTCCGGTGACCGACCGATTCCAGAGCTCTCCTCGCCGACCTCA
GTGCGGGTGCGCGTGGCGGCGACCAGCCTCAATTTCGCGACGTTCCTTCAAGTCCAGGGC
AAGTACCAGGAGCGCCCCCCGCTGCCCTTCGTGCCAGGGTCCGACTACGCCGGCGTCGTC
GACGCCGTCGGCCCCGGCGTACGCAGACTTCGCCCCGGCGACCGCGTCTGCTCCCTCGCC
AGCGTCGGGTCCTTCGCCGAGTTTATCGTCGCCGACGAGAAGGCACTATACGTAGTCCCT
GATGGATGTGACCTGGTCGCTGCTGGAGCATTACCTGTGGCATTTGGTACATCGCATTTG
GCCCTTGCCCACAGAGCTCAACTAAAGGCTGGTCAGGTGCTACTTGTACTTGGTGCTGCC
GGCGGTGTTGGGGTATCTGCTGTACAGATAGGAAAAGTTTGCGGTGCTATTGTTATTGCA
GTTGCCAGGGGAGTTGAGAAATTGCAATATCTCAAGTCAATAGGAGCTGATCATGTGATT
GACTCGAGCAAGGAGAATGTTATTGAGAGTGCCAAGTCCTTTTTAAAGGCTAGTGGTCTC
AAAGGTGTCGATGTTTTATATGATCCTGTTGGTGGCAAGCTTACCCAAGATAGCTTGAAA
CTTCTCAATTGGGGTGCACATATTCTGCTCATTGGATTTGCTAGTGGAGATGTTCCAGTT
ATTCGAGCTAACATTGCACTTATTAAGAACTGGACAATTCATGGTCTGTACTGGGGAAGC
TACTTAATTCACCGGCCAGCAGTACTCATCGACTCACTTAACGAACTCCTGTCATGGCTT
TCAAAGGGTTTGATAACAGTTAAAATTTCACACACCTACAGGCTCACTGAGGCCCATCTC
GCTTTTGCTGACTTGAGAGATAGGAAAGCC

Homology of Contig U35_1980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g24880.1	347	0.0	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi2g31190.1	347	0.0
Arabidopsis v10	AT3G56460.1	348	6e-153	GroES-like zinc-binding alcohol dehydrogenase family protein \| chr3:20933029-20934425 REVERSE LENGTH=348