barSeed - Barley Seed Development Database

Probe CUST_37910_PI390587928

Source Contig U35_803

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37910_PI390587928	Hv_44K_v2	GGGTAAAAAACTGTGTATGAGATACTTTGCTGAGATTGTAACTGTTACCATCCTTTTTTG	1430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44788.1	2502	7e-23	2193 - 2252	98	59 / 60	plus	ABC02602 ABC02607
JLOC1	JLOC1_29054.1	2429	4e-23	2196 - 2255	98	59 / 60	plus
Harvest21	ABC02607	837	3e-25	41 - 100	100	60 / 60	minus	ABC02607
Harvest21	ABC02602	596	1e-23	88 - 147	98	59 / 60	minus	ABC02602
Harvest21	ABC02599	1272	1e-23	1190 - 1249	98	59 / 60	plus
Harvest35	U35_803	1567	3e-25	1431 - 1490	100	60 / 60	plus
Harvest35	U35_16140	1081	1e-23	903 - 962	98	59 / 60	plus
Harvest35	U35_801	597	1e-23	451 - 510	98	59 / 60	plus

Contig Sequence (1567 bp)

>U35_803 1567 Hv_44K_v2
CGCTTGTCCACCTTCCTCCCTCCCTTCCTTCCTTCCTTCCTTGTTCCTCGACCCGCGCGG
CGCAGGCAGATCCCATCCAAGGCAGGCAGGCAGGTGAGTCGTCTCTTCCCCCGCGCTCCC
GAATCTCCTTCGCCTCCCCCCTCTCGTCCGTCCGCCGATCTCCGTCGCGGCCCGGGCGCG
GGTTCCGCCGGGCCGGGCGGAGGAATCGAGGATCGTATAGCTACCAAAGGCACAGATCCA
GCCCGGGCCGACCACCCAATCCCCACCTCTCGCGATTAGGGTTTCCGCCGCCGCCGCCGC
CCGTCTCGCCCGCCGGCCGCTCCTCCTCACCCCCTCCCCAGCGAAGCTCCGGCCGCCGCC
GCCATGTACGGCCACCGCGGGGCAATGATGGGAAGCGGGGGGGTTTCGGATGGGTACGAG
GGATCAAAGAGGCCACGAATGATGGAATCGAATCCATACTTCGCAGTGAACGCAGGGAGC
CCGTTGGACGTTTCAAAGCGGGCCAGGATGATGGAGCCAGGCCCCCCATATTTTGCAGGC
ATGGGAAGCAGCGCTGGTGGCAGCGGCAGCAGCTTCTACCCTAGCTACGGCGGCAACTTG
GCCGGTGCTGCTGGGGTTAACAGTGGCATCCAAAACTTTCCAGCGGTCCGTCTGCGAGGG
CTCCCTTTTGACTGCGAGGATGTTGACATCAGCAAGTTTTTTTCTGGGCTGGACATAGTG
GACTGCCTCCTGGTCCACAAGAATGGGCGCTTCTCTGGCGAGGCCTTTGTTGTCTTCCCT
TCGTCCATGCAAGCAGAGTTTGCGCTGCACCGCAACAGGCAGAACATGGGCAGGAGGTAC
GTGGAGGTTTTCAGATGCAAGAAGCAGGAATACTACAGCGCAATAGCCGCTGAGGTGAAC
CAGGGTGGTGCTCTCCTCGAGCCTGAGCACCGGCACTCCTCGCCTCCTCTACGGCCCAGG
AGGCTGTCTGAAGACAAGAGCAGCATGGAGTACACTGAGGTGCTGAAGCTGCGTGGGCTC
CCTTACTCCGCCACCATAGAGGACATCATCAAGTTCTTTGTGGAGTACGAGCTGACGGAG
GACAATGTGCACATCGCGTACCGCTCGGATGGGAAGGCCACTGGCGAGGCCTTTGTGGAG
TTCCCGACGGCCGAGGTTGCAAAGACTGCCATGTGCAAGGATAAGATGACCATCGGTACC
AGGTACGTGGAGCTGTTCCCCTCGACTCCCGAGGAGGCGAGCAGGGCGAAGCCGCGGGGC
AGGCACTGAACGCAGCTTACCACAAGATGCTGAACCCTGGGTGTCAGAAGGGCATAATCT
TGTTCCGGTTTAGCCTTTGTGCTCTCATCATGCTTAAAAATTGTATCTCTGTTGGATTGT
GTTAGTTCGCGCTCCTGTTTCTGATGAGACGGTCTCGTACTGCGTCTTCAGGGTAAAAAA
CTGTGTATGAGATACTTTGCTGAGATTGTAACTGTTACCATCCTTTTTTGAAAAAATGCA
CTTGTACTTCATGAAAAAAAAAAAAAAAGATGTGACTTGAGATTATCTGTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g03890.1	299	4e-160	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g01310.1	293	5e-159
Arabidopsis v10	AT5G66010.1	255	2e-85	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:26399612-26400753 FORWARD LENGTH=255