barSeed - Barley Seed Development Database

Probe CUST_37908_PI390587928

Source Contig U35_804

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37908_PI390587928	Hv_44K_v2	GCGGTCCGTCTGCGAGGGCTCCCTTTTGACTGCGAGGATGTTGACATCAGCAAGTTTTTT	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368861	3365	2e-24	313 - 372	100	60 / 60	plus	ABC02607 ABC08350
MLOC	MLOC_44788.1	2502	2e-24	1405 - 1464	100	60 / 60	plus	ABC02602 ABC02607
JLOC1	JLOC1_29054.1	2429	8e-25	1408 - 1467	100	60 / 60	plus
Harvest21	ABC02599	1272	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_804	510	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_803	1567	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_804 510 Hv_44K_v2
ATAGCTACCAAAGGCACAGATCCAGCCCGGGCCGACCACCCAATCCCCACCTCTCGCGAT
TAGGGTTTCCGCCACCGCAGCCGCCGCCGCCCGTCTCGCCCGCCGGCCTCACCCCCTCCC
CAGCGAAGCTCCGGCCGCCGCCGCCGCCATGTACGGCCACCGCGGGGCAATGATGGGAAG
CGGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGGAATCGAATCC
ATACTTCGCAGTGAACGCAGGGAGCCCGTTGGACGTTTCAAAGCGGGCCAGGATGATGGA
GCCAGGCCCCCCATATTTTGCAGGCATGGGAAGCAGCGCTGGTGGCAGCGGCAGCAGCTT
CTACCCTAGCTACGGCGGCAACTTGGCCGGTGCTGCTGGGGTTAACAGTGGCATCCAAAA
CTTTCCAGCGGTCCGTCTGCGAGGGCTCCCTTTTGACTGCGAGGATGTTGACATCAGCAA
GTTTTTTTCTGGGCTGGACATAGTGGACTG

Homology of Contig U35_804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None