barSeed - Barley Seed Development Database

Probe CUST_37902_PI390587928

Source Contig U35_1985

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37902_PI390587928	Hv_44K_v2	ATTCTTTAACGAGCAACCACAGCATGTATGAACTTGCTAAACACCTTGAAGCTCAAAAAA	1360	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.283	1.495	1.049	0.884	0.386	0.437
Raw	914.714	1652.042	1015.047	1369.308	208.516	255.190

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_1985	1431	3e-25	1361 - 1420	100	60 / 60	plus

Contig Sequence (1431 bp)

>U35_1985 1431 Hv_44K_v2
GATCCAGAGACGCATGTGCCGGCCGGCCGACACCAGCGAGCAACCACCGCCGGCGTTTTC
TTCGTGACCGGGAGCCCCGCCTGCGCGACCCCTTCCTCCACCCGGACGACCTCGAGCTCG
GGCGGCTCCACGCCGTCGAATCGCTCGACTTTTCCTCCTCTTCGGTCTGATCGCCGTCAC
CGTTCAAATTCGCCGCCGGCAGACCTCCTCCGCCCCTTTCGGCTACGCCAGCATCACCAG
AGGAAAATGAGCACCATGCTGTCAGAAAATGCTGAAAGGAGGCCAAGTGTGCTTGATAAC
CTGCAAAAGCAGCTAGATGAGGCTGTCCTCGATATGCAACTCTATGGAAAAGCTCTAGAT
GCGTTTGAGGACGATCCTGCTACCTCTGGCATATTACACAATCATCTGCTAACAACCATG
GGTACTCCAATAGTCGACAAGATTTTATTTAGTCTGGATAAGGACAACAAATTGAAGAAT
GGAATGGAGTTTGAAGACAGTGAAGAACAGCATGTTCAGCTGAGCACCACTGAGCGTACT
TTTCTGGCAAAGGATCTTCCAGGGCAATTGTCATCGAAGGCTCAAGCTTTAGTCGAAGCA
CTGGAGGGAAAGCGGTTTGATTCATTTATGGACGCCTTAAGAGATACAGCAGAGGAAAGT
GGTTTCTTATTTAAGAAGCTTGAGGAAAGACTTGAGCGATCAATGCTGCATTCCTACCGC
GAGGATTTGATAGCACAAGTTTCTTCAGAGACTGATCCAGTTTCCTTCCTCCCAAAAGTT
GTCGCTCTACTTTTTCTCGAGGCACACAACAAGGCTCTTCAGGTACCTGAAAGGGCTGTT
GGTGCTGTCAGCACACTACTGAAGGACAAGCTACCGGCTTCAACCTTCAAGGTTTTAACT
GAATATCACGCCACCACCGTGAAACTTCTCGCACTACAAGATGCTGCTACCGGTGATGAA
GATGATTGCACATCGGACCGAATGCTGGAGAAGAAGGAAGACCTGGAAGAGAGGCTGATG
CCAGAACTGAAATCCCTGGCCCTCGGTACAGGCAAAGAGTGAGCAGCAAAAAGTGCGTGC
ATGGTACGCCACGCCCTCGTGTAAATACACAGATCTATCTATCTATCTACCTATCCTTGG
CACCGGAGCAAGGGATGCAAGCAGCCACCCTGCGATACTTGTCAACTTAGTGCAAGCATT
CACTTGAATCCAGGGTACTAGTGTGTCGGTTGCATGCTTGCGTCGCCAGCTCGTTTGATG
CACTCTGGTCTCGCGATTTCTGAAGCAAAGAATCCATGTGTGTAATGCACCGTGTACGTT
ATATTCTAGGGGTTTGTGTGACGGCAGAATCAACTTCTTAATTCTTTAACGAGCAACCAC
AGCATGTATGAACTTGCTAAACACCTTGAAGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02650.1	827	3e-137	protein\|expressed protein
Brachypodium v1_2	Bradi2g37530.1	820	2e-148
Arabidopsis v10	AT3G46220.2	812	1e-87	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611). \| chr3:16979174-16983970 FORWARD LENGTH=812