barSeed - Barley Seed Development Database

Probe CUST_378_PI415269222

Source Contig TA31450_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_378_PI415269222	Hv_44K_v2	CATTTTTCCCCGGATGTCACCTCAGTGTTTGTTTTACCAGCCAGTTGTTTTGTGTTAGGC	1156	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.526	1.533	1.064	0.752	0.282	0.241
Raw	1970.330	2969.580	1885.520	2064.707	279.084	255.372

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45907.2	2028	8e-25	1860 - 1919	100	60 / 60	plus
JLOC1	JLOC1_45907.1	1571	8e-25	1403 - 1462	100	60 / 60	plus

Contig Sequence (1216 bp)

>TA31450_4513 1216 Hv_44K_v2
CTGGATCGTCCTCAGCCCGCTCCTGCCCGTCCGTCCCCACACACACGCACGCGTTTGACA
TTTCCTCCCCACCGCCGCCGGCGCCGCTGCTCCAGCCATGGCCGCCAAGTGCTACCCAAC
GGTCAGCGACGAGTACCTGGCCGCCGTCGCCAAGGCCAGGCGCAAGCTCCGTGGCCTCAT
CGCCGAGAAGAACTGCGCGCCCCTCATGCTCCGCCTCGCGTGGCACTCGGCCGGGACCTT
CGACGTGGCCACCAAGACCGGCGGGCCCTTCGGCACCATGAAGTGCCCCGCGGAGCTCGC
CCACGGCGCCAACGCCGGCCTCGACATCGCCGTCAGGCTGCTCGAGCCCATCAAGGAGCA
GTTCCCCATCCTCTCCTACGCCGACTTCTACCAGCTCGCTGGAGTCGTCGCCGTCGAGGT
GACCGGCGGGCCTGAGGTTCCCTTCCACCCCGGGAGACAGGACAAGCCCGAGCCTCCTCC
AGAAGGCCGTCTTCCTGATGCCACCCAAGGCTCTGACCACCTCAGGCAGGTGTTTTCCAC
TCAGATGGGTTTGAGTGACCAGGACATTGTTGCTCTTTCTGGTGGTCACACCCTGGGAAG
ATGCCACAAGGAGAGATCTGGGTTTGAGGGAGCCTGGACCGCCAACCCTTTGATCTTCGA
CAACTCTTACTTCACTGAGCTCCTGAGTGGGGAGAAGGAAGGTCTTCTTCAGTTGCCGAC
CGACAAGGTCCTGCTGACTGACCCGGCCTTCCGCCCACTTGTGGACAAATATGCTGCGGA
TGAGGATGCGTTCTTTGCTGACTACGCCGAGGCACACCTCAAGCTCTCTGAACTTGGATT
CGGCGAGGCGTCTGAGGGCTGCTGCTGATTCAAGATCGGCGCCTGAGGGTCGGTAATGAA
GAAGAAGATCATGAAGAAGAAGAAGATCATGAAGAAGAAGAGCAATAAGAATCTGTCGTC
GGCCCAGTGGCCATGTCATGTGTTTGTCTGGATTTGGATTAGATCGGTCGGTCGATGGGG
TGTTGCATTGTTTTGCTTTTGACGCCTCGTATCTTGTGATGGACCTGCTTGTAGTGTGAA
CCGCTAAGTGTTATGTAGTTCCTTTCCGGTTGTTTTTCCCTGTCGAGAACGAAATGAAAT
TTTTTTTGGTTCCCCCCATTTTTCCCCGGATGTCACCTCAGTGTTTGTTTTACCAGCCAG
TTGTTTTGTGTTAGGC

Homology of Contig TA31450_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g49400.1	252	2e-140	protein\|OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed
Brachypodium v1_2	Bradi1g16510.1	257	2e-155
Arabidopsis v10	AT1G07890.3	250	2e-126	\| Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 \| ascorbate peroxidase 1 \| chr1:2438005-2439435 FORWARD LENGTH=250