barSeed - Barley Seed Development Database

Probe CUST_378_PI390587928

Source Contig U35_9345

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_378_PI390587928	Hv_44K_v2	ACACAATGTTCTACTCCCTCCGTCCCTACAATTATTTTGGTATAGAGGAAGTATGATTCA	416	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.681	1.435	1.168	0.746	0.757	0.742
Raw	513.326	618.273	486.123	438.768	168.479	186.831

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373328	2092	7e-23	1780 - 1839	98	59 / 60	plus	ABC25252
Harvest21	ABC25252	600	3e-25	417 - 476	100	60 / 60	plus	ABC25252
Harvest35	U35_9345	592	3e-25	417 - 476	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_9345 592 Hv_44K_v2
CTTTTTGTTGTTTGGGGGCTACCTTCGTTTTGTATACAATTGGGGAAGTTTTAGTGCAAA
TCATGCTGGGTATGGCAGTTTGGATTCATCAGAGAATCATACTGGCACAGGCCATCAGCG
GAATATGTCTGATTGTGACACAGCTTCAGCTTTCTATTGGACGGGGATGGCTGCCATCTC
TACGATAGCATTATTATCACCAACCGTCCTTGGCATAACTGCCATTTTTGCAAAACTTGG
GTTGATGGTAGTGGGTGGTGTGGTGCTGGCGTCGTTTATGACATACGCTTCAGAGCATCT
AGCTATGTCGGCCTTTGTCAAAGGGTCAAAGAGGTAGATCGAAAATCCCCGAGAGGTAGA
AGCAATTTTGTTGTATTATGTGTTCCATGTGCCCATATTGTATCATAAGTCTGTAAACAC
AATGTTCTACTCCCTCCGTCCCTACAATTATTTTGGTATAGAGGAAGTATGATTCATCTT
AGTAGAAAAATGCCCAGGAAATTGGGTAGTTGCACTCATGTGCAACTTTAGTTTGACATG
TTTTATTTCTTCCTTGTAACTNCTAGCNTGTTGCAGCAAAGTAAATAGTCTA

Homology of Contig U35_9345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None