barSeed - Barley Seed Development Database

Probe CUST_3789_PI390587928

Source Contig U35_40627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3789_PI390587928	Hv_44K_v2	AGAAGCTACGCCAGATGAACGAAAGCATATGGACTCAAACCACATAAATGCTATATACTT	629	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.130	2.569	0.923	0.868	0.432	0.636
Raw	82.919	108.288	32.866	49.281	8.343	13.881

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61036.1	1732	2e-24	1579 - 1638	100	60 / 60	plus	None
MLOC	MLOC_61036.3	1307	2e-24	17 - 76	100	60 / 60	minus	None
MLOC	MLOC_61036.2	1783	2e-24	31 - 90	100	60 / 60	minus	None
JLOC1	JLOC1_39849.2	1999	8e-25	1663 - 1722	100	60 / 60	plus
JLOC1	JLOC1_39849.1	1552	8e-25	1216 - 1275	100	60 / 60	plus
Harvest35	U35_40627	692	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_40627 692 Hv_44K_v2
GGCCCGGATATTGAACGCAAAGCATTTCCAGAGGTTAAGCAACTTTTTGGACGATAAGAG
GGTGGCATGTTCAGTGGTGCACGGGGGATCAGTGAACCAAAAGACATTGACCATTGAACC
CACCATATTGTTAAATCCGCCACTCGATTCTGACATCATGACTGAGGAGATATTTGGCCC
ATTGCTCCCTATCATCACGGTGAAGAAGATCGAAGATAGCATTAAATTTGTGACATCGAT
GCCGAAACCATTGGCAATCTATGCTTTCACCAAAAACGAGAAACTAAAACAGCGATTTAT
AAATGAAACGTCATCCGGGAGCATCACGTTAAACGACGCAATTGTGCAGTATGTAGTGGA
AGGCCTCCCGTTCGGTGGCGTCGGGCAAAGCGGATTCGGACAGTACCACGGCAAATACAG
CTTCGAGCTTTTCAGCAACAAAAAGGCGGTGTTCAAGAGAAGCTTCCTCATCGAGTTCAT
GTTCAGATACCCGCCATGGGATGACAGTAAAATCGGGATGCTGAGACATGTTTTCAACAC
GAACTACATACTTCTACTCCTTGGACTGCTCGGCTTGAGGAGATGATGGAAGAAAAACCG
GGAGAAAGAGGCCGGGCGAAATAGCCAAGAGAAGCTACGCCAGATGAACGAAAGCATATG
GACTCAAACCACATAAATGCTATATACTTTTG

Homology of Contig U35_40627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43280.2	379	5e-98	protein\|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g50200.1	485	3e-107
Arabidopsis v10	AT4G36250.1	484	1e-68	\| Symbols: ALDH3F1 \| aldehyde dehydrogenase 3F1 \| chr4:17151029-17153381 FORWARD LENGTH=484