barSeed - Barley Seed Development Database

Probe CUST_37896_PI390587928

Source Contig U35_1989

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37896_PI390587928	Hv_44K_v2	GTCGTGCTTCCTCCGCATTTGGGATTGGATAATGTAATGGTTCGTGTACATAGCAAAAAA	2286	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33688.7	1918	9e-22	1780 - 1834	100	55 / 55	plus	ABC07030
MLOC	MLOC_33688.3	2760	9e-22	2308 - 2362	100	55 / 55	plus	ABC07030
MLOC	MLOC_33688.1	3008	9e-22	2826 - 2880	100	55 / 55	plus	ABC07030
JLOC1	JLOC1_21784.4	3284	5e-22	2978 - 3032	100	55 / 55	plus
JLOC1	JLOC1_21784.3	2635	5e-22	2329 - 2383	100	55 / 55	plus
JLOC1	JLOC1_21784.2	2958	5e-22	2652 - 2706	100	55 / 55	plus
JLOC1	JLOC1_21784.1	2341	5e-22	2160 - 2214	100	55 / 55	plus
Harvest21	ABC07030	1781	3e-25	26 - 85	100	60 / 60	minus	ABC07030
Harvest35	U35_1989	2379	3e-25	2287 - 2346	100	60 / 60	plus

Contig Sequence (2379 bp)

>U35_1989 2379 Hv_44K_v2
CCCCCACTCGTGGCCGGACCTGACCTCGTGTCGTCACTGTCGCCCGCGAGGCTTCGCCGG
ATTGGAACCGGGTACGACACGGCGGCGATGGTTTCAGCCGCCGGCCCCCTCGAGCTCTGC
TAATCCGCGGCTCGGCCCGGCATCCGGTGGCCTAATTCGACGCCCGATCAGGATGGCGTT
GAAGGATGCCAACTCGTAATCGTCACGCCCTGGAATGGATGCTAGAGAATCAAGCCGTCG
GCACCTCTAATATGCACCTTTGAGTCTATCCATGGTCTGTGACACTGTACGTCCATCCAT
AGACTTGAGCAAGTGATCAGGTTTTCTTCAGCGCAACAACTCGTCATGGGCAGTGCTTGC
TCAAGGAACAGAGGCCAAGTGGTCCATGAGGACCAACTGTACAGCGTCAAGTTCTCCAAG
AGCGGCAGCTTCAAATGGCTGATGCACACGCTGTCCCGCAGCAGCTCCGATGTGCTCCGG
AAGGCCCAGGGACCGACGCCAGGTCGCCGCCCAACTCTGGTGGAACTTTGCGTGGCCAGA
GTCCGTGAGGACATAAGCAGGTATTCAGATTTCTCCATGCTACCTAGGGATCTTAGCCAG
CTGATATTCAACGAACTGGTGCAGTGTAGCTACATCAATGAGGAGTTGCTGGGAGCTTTT
CGTGACTGTGCTTTGCAGGATATCTGTCTGGATGAGTACCCTGGAGTGAAGGATGCTTGG
ATGGAAGTAATTGCTTCTCAAGGGCAGTCCTTGCTATCTGTTGACATCTCTTGCTCTGAT
GTGACTGATAGTGGATTGAATCTCCTTAAAGATTGCTCAAATATGCAAAGTCTGGCATGC
AATTACTGTGATCAAATTTCTGAACATGGACTTAAAACCGTGTCAGGCCTCTCAAACTTG
ACATCGCTCAGCCTTAAGAAATGTGCTGCTGTTACAGCTGACGGAGCAAAAGCCTTTGCA
AACTTAGTTAACTTGGTAAATTTGGACCTTGAGCGATGCCCAAAAATTCATGGTGGCCTT
GTTCACTTAAAAGGCTTGAGAAAACTGGAAACGCTGAACATGAGATATTGTAACGGCATC
ACAGATTCAGACATGAAGTATTTATCAGATTTTACGAGCTTGAAAGAGTTGCAACTGTCT
TGCTGCAAAATAAGTGATTGTGGTGTTTCTTATCTGAGAGGTCTGTCCAAACTATCCCAC
TTAAATCTGGAGGGCTGTGCAGTGACTGCTGCTTGTTTGGAAGCTATATCAGGATTGGCT
TCATTGGTTTTATTAAATCTCAATAGGTGTGCCATATGCGATGAAGGCTGTGAGAAATTG
GAAGGTCTTGTCAAATTGAAGGTTCTTAATTTAGGATTCAACCACATTACAGATGCCTGC
TTGGTTCATCTAAGAGAATTGATCAATTTGGAGTGTTTGAACTTGGACTCATGCAAGATT
GGTGATGAGGGGCTATTGCACCTAAAAGGCCTTTTGCAGTTAAGAAGTTTGGAACTTTCG
GACACTGCAGTTGGGAGCAATGGACTTCGTCATCTCTCTGGTCTTCGGAATTTGCATAGC
ATGAATCTCTCTTTTACCGTGATTACGGACATTGGTCTGAAGAAAATTGCTGGCTTGAAT
TCACTGAAGTCACTTAATCTTGATAATCGTCAAATTACAGACAACGGCTTGGCAGCTCTT
ACAACTCTCACTGGATTAACGCACCTTGATCTTTTTGGAGCTCGTATAACTGATGCTGGG
ACAAGCTGCTTCAGATGTTTCAAGGGTCTGCAGTCTCTGGAGGCCTGCGGCGGGTTAATC
ACCGACGCTGGAGTGAAGAACATCAAGGACCTCAAAGCCCTGACGTTGCTGAACCTATCC
CAAAACGGCAACCTCACAGACAAGACCTTGGAGATAATCTCGGGCCTGACGTCTTTGGTC
TCGCTGAACCTGTCGTACTCTCGGGTGTCGAACGCAGGCCTCCACCATCTGAGGCCGCTG
CAGAACCTGCGCTCGCTGTCGCTCGACTCGTGCAAGGTGACGGCCTGCGAGGTCAAGAAG
CTTCAGCTGGCCGCCCTCCCCAACCTGGTAAGCGTGCGTCCGGAGTAGTCTTCCGGTAAC
AGGCACCTTCCGTCCACGTGTAAATATGACCACCCCGAGTAGAGCAGGCAGAACGGGCCT
GCGCGTCTGTACATACATAGTCTTGTGAGTTACGGCAAGGATTGATCTGATGATAGACTG
AACTGTTTATGTCGTCTGTTTATGGTGTGCCCATCAAAGCTGATGCGAAGAAACAACTGT
AAATGCGTCGTGCTTCCTCCGCATTTGGGATTGGATAATGTAATGGTTCGTGTACATAGC
AAAAAAAAAATTGGTGTTTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g42470.4	582	protein\|regulatory subunit, putative, expressed
Brachypodium v1_2	Bradi5g14870.1	581
Arabidopsis v10	AT1G15740.1	585	Leucine-rich repeat family protein \| chr1:5411509-5414544 FORWARD LENGTH=585