barSeed - Barley Seed Development Database

Probe CUST_37892_PI390587928

Source Contig U35_1990

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37892_PI390587928	Hv_44K_v2	TGCAAATGCCTAATCAGTTTGTACTTGCCGCCTTCTGTTTTGCATTGCAAATGATATACA	863	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.052	1.354	1.081	0.817	0.366	0.328
Raw	1952.617	2008.067	1419.143	1685.627	267.319	258.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249310.1	970	2e-24	879 - 938	100	60 / 60	plus	ABC06443
JLOC1	JLOC1_37532.1	1121	8e-25	958 - 1017	100	60 / 60	plus
Harvest35	U35_1990	926	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_1990 926 Hv_44K_v2
TTCGGACGAGGCCGCCCACCTCCACTCATCTCCCTGCCCCCGCCGGTCTCGCGCCAGAAC
GCACCGCCGCCGCCGCCGCCGCGCTCCTCCAGGAACCTCCACCCCCGCCTTCTACGCGCT
CGACGCAAGCTCCTCGCTCTCAGCCACGGCGTGAGGGATGATGAGGAAGCTCAAGTTCCA
TGAGAGGAAGCTGCTGAAGAAGACCAACTTCCTCCTGTGGAAGCGGGAGGGCGGCCACCG
CGAGGCCGCCGTCACGCAGCGCTACAGCCTCGTCGACAGGGACGACTACAAGAAGTACAA
CGGGATTTGCCTGATGTCGCAGAAGCTCGTGAACATCATAAAGCAGATGGATCCCAGGGA
CCCTTTCAGAATCGAGATGACAGGCATGCTGCTCGATAAGCTGTATAATATGGGTGTAAT
TCCAACAAAGAAGAGCTTGGTTAAATGCGAGAGACTTTCAGTGAGCGCTTTCGCCAGGCG
GAGACTTGCAACAATTATGGTGAAGCTCAAGTTTGCTGAACACCTTAAAGAGGCTATCAC
CTACATTGAACAGGGACATGTGCGTGTAGGCCCAGAGACGGTCACCGATCCAGCCTTCCT
TGTGACCAGGAACATGGAGGACTTCATCACCTGGGTGGATTCCTCGAAGATCAAGAAAAA
GATCATGGAGTATAATGGTGCATTGGATGATTATGATGCCATGATTTGAGGATGTGTCGT
GATAGTAGAAATTTCGGGACCATCGGTGATTCAGTTTAGCTACTCCTGTAATATTTTTTA
AACCTGAATCTGAGGCTACAATATGTTAAGATAGTTATCTGTTGCAAAGCTACTTGTGTG
ATAAAAGCTAAACTGCTATAGAATGCAAATGCCTAATCAGTTTGTACTTGCCGCCTTCTG
TTTTGCATTGCAAATGATATACAGTA

Homology of Contig U35_1990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56670.2	183	1e-109	protein\|S4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g24980.1	183	9e-119
Arabidopsis v10	AT5G15750.1	182	9e-99	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein \| chr5:5141449-5142701 FORWARD LENGTH=182