barSeed - Barley Seed Development Database

Probe CUST_37890_PI390587928

Source Contig U35_1991

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37890_PI390587928	Hv_44K_v2	AACTTCACTTGTGGAAATGTAATCTCACGTTGTTGTGGTGTGGCACTCTTCTGCGGAATG	1756	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.699	1.482	1.053	0.890	0.375	0.481
Raw	1065.762	1408.735	896.993	1181.570	177.745	247.046

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11810.1	706	3e-21	653 - 706	100	54 / 54	plus	None
JLOC1	JLOC1_7867.1	796	8e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_1991	2114	3e-25	1757 - 1816	100	60 / 60	plus

Contig Sequence (2114 bp)

>U35_1991 2114 Hv_44K_v2
AAACCCCCTCCCTCGAGTCCTTCCTCGGACCGACGGACCCTCCTCCCCTGCTCTATTCAA
TTCCTTTGCCACAAGTCTCCGATCGGATCTCCCGGCGCCGACCATGGAGCCCAAGCCGCC
CACGCCCACGGAGGAGGAGGCGGCGGGGGGGACGACCCCTCGTTTTAAGCTGGGGAAGCA
GTCGTCCCTGGCGCCCGTCCGCGGCGGCGCCGATGAAAACGGCGCTGAGCTGTCGCCAGA
GGCCGCCGGCGTCGCGGGTTTCCAGCTCATGTACCTGGCGCACGAGGGCAACGCGGAGGG
GATACGCGAGCTCCTAGACGCCGGCGCCGACCCCAACTTCCGCGACTCCGACGGCCGCAC
GGCGCTGCATATCTCCGCGTGCGAGGGCCACGCCGAGGTCGTCGAGCTGCTCCTCGACCG
CGGCGCCGAGGCCGTCGTCGAGGACCAGTGGGGAAGCACGCCTTTGGCAGATGCGATGCA
TTACCAGAATCATGATGTTATCAAGATCTTGGAGAAGCATGACTCCAACCATAAGGTTGC
TCCTATGCATGTTAACAGTGATCGTGATGTTCCTGAATACGAGATTGACCCAAACGAACT
TGACTTCACTAATGGCAAAGATTTAGCTAAGGGTACATTTCGGAAAGCAACATGGAGGGG
CATTCTGGTTGCTGTTAAGAAGCTGGATGATGATGTACTTACTGACGAGAATAAAGTACA
GGCATTCAGGGATGAGCTTGACGTTCTCCAACTAATACGGCATCCGAATGTCGTTCAATT
TCTGGGTGCTGTAACACAAACCAACCCAATGATGATTGTCATGGAATTTATGCCGAAGGG
TGATCTGCGCAAACACTTGAATAGGAGAGGAGCTCTGGAACCTTTGTATGCAGTTAAATT
AGCTCTTGATATTGCAAGAGGAATGAGTTACTTACATGAGCATAAACCCCAAGGTATCAT
CCACCGTGACCTTGAGCCTTCAAACATATTGAGGGATGATACTGGGCATCTGAAGGTGGC
AGATTTTGATTTGTGTAAGATGCTAAAATGGAGAAGAAAAGTCAGAGAGGACAAACCAAT
TACTTCTCCTGGCAATGCCTGTAGGTATGTAGCTCCAGAAGTCCTGCGTAAAGAGGAGTA
CGATAATAAAGTTGATGTCTTCTCGTTCGCTTTGATACTTCAGGAGATGATTGAAGGATG
CCTCCCTTTTCACGATAAGAAAATTGATGAAATTGAGAAGGCCCATAGTTCTAAAGAAAG
GCCACCCTTTAGAGCTCCTCCAAAGCATTATGCCTACGGGCTAAGAGAGTTGATTGAGAA
ATGCTGGAGTGAAAATCCTGCTGATAGGCCCAATTTTAGAGTGGTTATTGATCGGTTGTC
TGCCATCCAAATCGAACTAGCTCGCAGAAACCGTTGGAAGGTCAGACCTCTGAAGTGTTT
CCTGAGCTTCGAAGGTTTGCGGAAGAAGGATCGCAATGAGGGCAGCACCAACCGTTCGTC
ACGCTCATCGCGATAACAGCCAGCTGAGGTTGTTGATTTCATTTGGCGGCTCATATTCAT
GATTGATAGGAAGTCAACTCACCGTACCATTATTTTTGTGTGTCTAAATTCTCTCTCAGA
AGAATGGCATGCTAATGTTACTTCCCTGCTGATCAGAACGCTGTTGTACACCAGACGTTA
TTCACTAAGCCATCAAGGAATTCATGTACAGATTTGTCTCTTCTGTTTTATAGTTTGCTT
TTGGTGATAGCAACGCAACTTCACTTGTGGAAATGTAATCTCACGTTGTTGTGGTGTGGC
ACTCTTCTGCGGAATGCTGAGCGGCCGCTATCCAGCCTTCCTTGTGACCAGGAACATGGA
GGACTTCATCACCTGGGTGGATTCCTCGAAGATCAAGAAAAAGATCATGGAGTATAATGG
TGCATTGGATGATTATGATGCCATGATTTGAGGATGTGTCGTGATAGTAGAAATTTCGGG
ACCATCGGTGATTCAGTTTAGCTACTCCTGTAATATTTTTTAAACCTGAATCTGAGGCTA
CAATATGTTAAGATAGTTATCTGTTGCAAAGCTACTTGTGTGATAAAAGCTAAACTGCCA
TAGAATGCAAATGC

Homology of Contig U35_1991 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54480.1	469	0.0	protein\|serine/threonine protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g49790.1	451	0.0
Arabidopsis v10	AT3G58760.1	471	2e-178	Integrin-linked protein kinase family \| chr3:21728756-21731740 FORWARD LENGTH=471