barSeed - Barley Seed Development Database

Probe CUST_3788_PI390587928

Source Contig U35_26334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3788_PI390587928	Hv_44K_v2	CTGAAGATTGGTTTTGTGGACGCATCGTGGTTGGTTCATACAAAGAAAGATACATTCTTG	535	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.968	1.486	1.434	1.052	0.499	0.416
Raw	719.769	1654.442	1433.420	1601.876	275.305	251.634

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36456.1	1424	2e-24	25 - 84	100	60 / 60	minus	ABC47915
JLOC1	JLOC1_23471.1	1514	8e-25	1344 - 1403	100	60 / 60	plus
Harvest21	ABC47915	615	8e-21	536 - 598	95	60 / 63	plus	ABC47915
Harvest35	U35_26334	612	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_26334 612 Hv_44K_v2
GGGCTTGCAGGGTCGTCTGGGGAGATCCTGCCGGAATTGGTAGACCCGACGATCCGTGAC
TCGGTTGACATGGACCAGCTGCACCTGGCGGTCGGCATCGTCCAGTGGTGCACGCAGCGG
GAGGGGCGCCAGCGGCCGTCCATCAGGCAGGTGTTGCGCATGTTCTCCGAGCGGCTGGAC
CCCGGCAATGGCAGCTTTGGTGAGGGCATGGACGACGCCGACGGCGGCTTCTACCCGGGC
CGGAGCAGCAGGGGCGGCGCCGCCGGCATCCACCGTAACGAGCTCGTCCCCTGCGGCGGC
GACATGCGGTCCCTCCACTCGTCGTCAAGCACAACAAGGTCCTACTGCAGCCGCAGCATG
TTGCTCGAAGGAGGCCAGGCTCACTCTCCCCCTGAAACCCTCTGAATGACCAGATTCTGT
TTCAGAAGAGGAATTTTTTGCTCCTCCGCACGATAATACTTCGATTTGTGTGGTCGATTG
GCGAGGCGACGTTGGAGCTCGCAGCCGGAGGCGTTATGGGTTAGATGTTGTGGTGCTGAA
GATTGGTTTTGTGGACGCATCGTGGTTGGTTCATACAAAGAAAGATACATTCTTGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_26334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59320.1	674	5e-51	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi5g27240.1	681	2e-56
Arabidopsis v10	None