barSeed - Barley Seed Development Database

Probe CUST_37875_PI390587928

Source Contig U35_820

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37875_PI390587928	Hv_44K_v2	ATTGTGAGTGGAAGACCTATGTGCTTTCACCTAGTTATATTATTATGTGATTCCGTGTCG	3043	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74717.1	3150	2e-24	3036 - 3095	100	60 / 60	plus	ABC02656 ABC34888
JLOC1	JLOC1_49820.1	3102	8e-25	3032 - 3091	100	60 / 60	plus
Harvest21	ABC34888	196	3e-25	107 - 166	100	60 / 60	plus	ABC34888
Harvest21	ABC02656	3063	4e-24	2980 - 3037	100	58 / 58	plus	ABC02656
Harvest35	U35_820	3125	3e-25	3044 - 3103	100	60 / 60	plus
Harvest35	U35_819	858	3e-25	780 - 839	100	60 / 60	plus

Contig Sequence (3125 bp)

>U35_820 3125 Hv_44K_v2
ACCGAAGGAAAAGGCGTGATAAAAGAGGACTCTAGCACCCGAGCCTTGGCCCGCACCCGC
ACATCGCCACTCTCCCCCACGCCACCACCACCGCCGCTGCGGCTTACGGCTACGCAGCTC
TCGCGTCCCTCGACGCCGCCGCCGCTGTCCGAGGTTTCCGGCCGCTAACTTCGTCTCCTC
TAGGATTGACCCGCTCCTCCACACGATCGCTGCGTCCTCCGCCTCTCCCACAGGGTTTCT
CTGCCGCCATGTCCGGCCTGAGCGCGCCGCCGTTCGACGGCCTCGCGTCGGGGCCCGACC
CCTGGGACGTCGTCGTCAAGGTCAAATATGGTGACACACTTAAGAGGTTCAATGGCTATG
TCAACGGAACACACTTCACTTTGAATCTATCTGCTCTTCGTTCCAAAATTGCAAGTGCTT
TTAAGTTTGGCCCTGATGCTGACTTCATTCTCACTTACACTGATGAGGATGGGGATGTTG
TCATGCTGGACGATGACGAGGACTTGCATGATGCAGCTATCCATCAGAAACTGAACCCTC
TCAGGATTAATGTTCAGGTAAAGAATAGCCATGCTGATGCATCTCACATTAACCGGCAGG
ATTCAAGACCTAAACCTGTTAGGGACACTACTCAGGATCCATTAGCTCAGATAAAATCAG
TAATTGATGAAGCTTTGAAGCCCATATCAGAACCTTTGAGATCCACTGCAAGGGAAGATC
CACTAGCTCATTTAAAATCAGCCCTTGATGAAGCTATGAAGTCTATCCATGAGCCAGTTC
CTGAATCCCTTGCAAAACTTTCACGTGAAGTACTTGATGCAGCACCACCACAATTAACTG
ATCTGATAAAACCTTTTGTGAACTTGATCACATCAACCAACAGTAGCCAATCTGCTGGGC
ATGCTGAGAGTTCACCTGTCTCCAGTGGTGTGCAGCAAGCACAGGTTGATCTCAAAGCTA
ATGATCAGCCTAAAGTTGATTCAAGTTTGGGTTCATCTGAGACAAGAGGTCTTAAAAGTG
TGTTAGCTGAAGTTCCTGCTGCAGTCATCACTGAAGCTTCTCAAGGCCAACAAGGATCAT
TATATCCTTCTGTTGAGGATTTGCTGTTCACCTCTAATTCAGGTGGTAACAGTTCTGGTT
GCAAGGGTATGAGTAATGCTGAAAGTAAGGGGAAGTCTGTCATGCCCTCTGCTGAACCAC
TGTCTCGTTCCACTGTTCCCAATTTTCGTCCAAGTCATCCAAATGCATCTGGATATGAAT
GGTACCAGCCACGAAGATCGACGGATGGATGGTCCCAGCCGAAATCCATTTGGCAACCTG
AAGCTAATGTCAAACCAGCAAGTGATCCTGGATGGCGTGTTCCAATGTATAAGGCGCCTC
ACCCATCCCCACCAGTCCCCCATGCACCCTTGGGCTATGGACATTCTCCACAATTTCCTT
ACCCTGGCCGTCTGCTATCTGCTGGGCGTCTGCATGGGAATCTTAGTAATAACAGTGAGA
GGTCACCACGAATTTCACATAGGTGGATCCAGTGTGATGGTTGTGGAGTTCAACCAATTG
TTGGGCCACGCTACAAGTCTAATGTGAAAGAAGATTATGATCTGTGTGATACCTGCTTTC
GTCGTATGGGAAGTGAGGTTGAGTACACCAGAATAGACAAGCCTATCCTGCCACACAAGT
TATCTCGGGACCTTAATTTGTGCCGGAAAATCCATTCACGTGTTTCGATGAAGTCAAAAC
GTGAGAAACTTGAAAGCCGCTTCATTTTGGATGTAACGGTGCTGGATGGCACACTTATGT
CTCCTTCAAGCCCGTTCACTAAGATTTGGCGCATGCACAACAATGGGTCTATCATGTGGC
CCCTGGGAACACAGCTAATTTGGGTCGGTGGAGATCAATTTGCACTGCAGACCTCTGTCC
CACTAGAGATTCCATTGAATGGATTTCCGGTGGATCAAGAGATGGATGTTGCTGTTGATT
TTGTGGCGCCTGCAAGGCCTGGGAGGTATATATCTTACTGGAGACTGGCATCGCCTTCTG
GTCAAAAATTTGGTCAGCGAGTTTGGGTTCATATCCAGGTGGAAGATCCATCTTTTGTGA
GTGACAACAAGACAGCTGCTGTGAACTTGAATCAGCCTCAGGAAAGCAACATCACAAACA
CAAGTAGTCTGCCTCAGGAAAGCGACATCACAAACGCAAGTAATTTGATTGATGTCAACG
TTGAGCCTGCCAACCAAGTCCTAGATGAACATGTCAATGACACTAGAATTGAACTGCTGG
AGCCTTTGATATACCGTGAAGCTGCTGAGCCCAAGAAATCTCCCTCAGCATCTGCAGCAG
CTCCTCTATACCCCAAAGTTGATGTTCCGTCATCCAGTGAAAATGCAGCTGGTTTTGTGC
CAAGTGTTAATGTACTTGCACCGGAAGTCATTCCGGAACCTTCTGCGACTACACCCGCTG
AAGTGCCCACAAGTTTGCTTACTAGTATCCCTGTGGATCTGACCGTAGCTGCAACCGCAC
CTGTGGATGTGGCATCTGCGCTGCTTGACATCGACAGACTTACAGAAGAGAAACTGCTGC
AGGAGCTGGAGGAAATGGGCTTTAAGCAGGTTGATCTGAACAAGGAGATACTGAGGCAGA
ATAAGTACAACCTGGAGCAGTCGGTGGATGATCTGTGTGGTGTCAATGAATGGGACCCTC
TGCTGGCGGAACTGAGCGAAATGGGATTTGATGACAGGGAGACGAACAAGGAGCTGCTTG
CCAAGAATGGAGGAAGCATCAAACGAGCTGTGATGGACCTCATCGCCAGGGAGAAGAAGG
ACAAGTGAAGATCGTGAGCTCTCGAACACCTATTTATCTATATCTATTTATATATGCCTA
AATAACGAGACAGTGTGTCCCGTAGTTTGCCTATGAACTGCTGTGAAGACTTGTTGGTGT
GACTTCTGTGTGCGGTGTGAACTTTATTATGTTGTGACCGTGGTGGGTCAGCTGCGTGTG
GTTGCTGTAATCGGCTTAGTTGCTCTGTTCCTACTATTCAACTATTGTGAGTGGAAGACC
TATGTGCTTTCACCTAGTTATATTATTATGTGATTCCGTGTCGAAAAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38050.3	846	0.0	protein\|joka2, putative, expressed
Brachypodium v1_2	Bradi3g47580.1	850	0.0
Arabidopsis v10	AT4G24690.1	704	2e-99	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein \| chr4:12741191-12744202 FORWARD LENGTH=704