barSeed - Barley Seed Development Database

Probe CUST_37868_PI390587928

Source Contig U35_22635

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37868_PI390587928	Hv_44K_v2	TTATCTAGTTACAAGAAGTCAAGAACACCATCTGGTCTCATGTCGTTGGTGCCAAGAAGT	739	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.158	1.272	1.146	0.925	0.350	0.382
Raw	356.415	622.776	484.959	623.697	82.221	96.286

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57773.1	1713	2e-24	1188 - 1247	100	60 / 60	plus	ABC26551
JLOC1	JLOC1_37499.1	1366	8e-25	1188 - 1247	100	60 / 60	plus
Harvest21	ABC26551	604	3e-25	530 - 589	100	60 / 60	plus	ABC26551
Harvest35	U35_22635	814	3e-25	740 - 799	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_22635 814 Hv_44K_v2
CAGGGCATGCGGGAGCTAGCGCAGGCGATACGGCGCCTTGGCGAGGCCTACGAGCGCGTA
GAGACAGCGAAGCTGGAGCAGGCCGCCGAGATGGAACGCCAGCGTCTGGACTTTGCGCGG
GAGCTTGAGTCGCAACGCGTGCAGTTCTTTCTCAACACGCAGAAGGAGCTCTCACAGGGC
AAGAACCACATCTCTCCCGCTGCGGCTGCCTCCCACTCCCAGGCAGGTGCCACCACTGTT
GGTGGCTCATCTAGGAGGATGGCATCCGGACCAGATTCCACATCGAGAAGAATGTCATCG
TTCCATGATGCCAGGACGAGCAGCAATCACCATGATCGGTACCGTGCCAGCGACGGTAGC
AGACACCATCACCGCCATGCCCTTCGCCCGCATTATCAGTACCATGAGAACAACATGGCC
GACTCTGCAGCTGCCAGCGACGGTGAGCAGAGCGATGATGAGGAGGAGGAAGAGGACGAT
GACAACGAGGAAGAGAGCCAGTAATGACAGACTGAATAACAAGCCAAGGCATTGGTGATT
CAAAGAGTTTTTATTGGTATGTGTTAGGGTTACATTGCAACAACTTAGCTTATATTGAAT
GCAAGCAGGAACTATATGTCTAGGAAGTAATTCATTGGCAATCGTTTATCAAAGTGAGAT
CTCTAGGAGTATAATTAGTAGGCAGTTATGATAAGCTCCCGCCCTGTACCATGTGCTAGC
CACATAATTTCATGTCTCTTTATCTAGTTACAAGAAGTCAAGAACACCATCTGGTCTCAT
GTCGTTGGTGCCAAGAAGTGTGGCATGTTTGCTA

Homology of Contig U35_22635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g11070.1	419	1e-53
Arabidopsis v10	None