barSeed - Barley Seed Development Database

Probe CUST_37867_PI390587928

Source Contig U35_22636

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37867_PI390587928	Hv_44K_v2	GAAAGCCACAACTTCCATTTGCTTCATTGCACTGCAATATCATAGTCTCATTAACTATTT	846	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367673	943	2e-24	857 - 916	100	60 / 60	plus	ABC18058 ABC23584
Harvest21	ABC18058	953	3e-25	847 - 906	100	60 / 60	plus	ABC18058
Harvest35	U35_22636	953	3e-25	847 - 906	100	60 / 60	plus

Contig Sequence (953 bp)

>U35_22636 953 Hv_44K_v2
CCAGCTTCCTCCCCTGCTTGAGGAGCAACCCCCAGTGCCCAGTTCCTTCTCTCTGGCCGC
CATGGACACCGGCCTCCCCCTCCCAAATTCGCTCCAAGCCGAGCCCTCTCCCACCCCTGG
TAGCTTCTGCATCTCCCCTCACTGCCGACGAACCTCCCCCTCCCCTCAGTTCGCTGCCGA
AGCCCTTGTGGCTGCCGCCCCAGTCGGCACCCGATCAGCCTCCGCCATGGCCATGGGCCC
CCGTGCTCCGGTATTCCCCTAACGTCGCCACCTAGGGGGATGGATGCGTCCCGCTGTGCT
GGTCATCCTGGTAGGCTGAGCGCCACCAGCGGTGGCCTGTGCCGCCGGTAGTCGCCATCG
GGGCGGGGCCCTGCCCCGGCCAAGCAGGAAGCAGGAGGTTGAAGAAGCAGTAAGGGAGAG
AGAGAGAGAGAGGGTCCCGACAGGTGGGCCCTGACCCCACCTGTTGGTGAGAGGGGAGCC
GCCAGCCGGTTTAAGTGGAAACGCCTCGGGAGTAATTACGTTTTCCTCATGGGAAGCGTA
TTCTCCCTGAGTGCGCGACCAACTCGGCTGCCAGGGACCCGGATGTAAATAAAATTTCTG
CAGATCAGTCCCTAGCACCAAAAGCTTCATATCTTTTTATCCGTGACTCCAATTCCAGTG
ATTCCAAAGCCCACGTATTCGTATCGTCGAGCCCGACAAGATGGTATCATTTCCACCATG
TGATCTCACAATTGAAATGACCATGTTGCCCTTGCCGTAAACAGCCCCTCCTCCGAGAGA
GAACTGTTTCCGGCAATTCCTTCCGCGAGTTTCTCGCGCTTCTTCCCGGTGGTTCCATCA
TCCCAGGAAAGCCACAACTTCCATTTGCTTCATTGCACTGCAATATCATAGTCTCATTAA
CTATTTTAATAATAAATATATATGTTGATAGTCTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None