- Probe CUST_37864_PI390587928
- Source Contig U35_22639
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37864_PI390587928 | Hv_44K_v2 | GTTTCAATGATCTCAATCTCCTTGTCACCTAAGGAGCTTGACACGAATTCGCCCGGATAT | 404 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.942 | 0.994 | 2.143 | 1.653 | 0.627 | 0.694 |
| Raw | 202.589 | 300.857 | 636.247 | 757.265 | 105.884 | 125.596 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36723.2 | 2894 | 2e-24 | 1630 - 1689 | 100 | 60 / 60 | plus | ABC11309 |
| MLOC | MLOC_36723.5 | 2334 | 2e-24 | 1058 - 1117 | 100 | 60 / 60 | plus | ABC11309 |
| MLOC | MLOC_36723.3 | 2483 | 2e-24 | 1545 - 1604 | 100 | 60 / 60 | plus | ABC11309 |
| MLOC | MLOC_36723.4 | 1264 | 2e-24 | 255 - 314 | 100 | 60 / 60 | plus | ABC11309 |
| MLOC | MLOC_36723.1 | 2695 | 2e-24 | 1563 - 1622 | 100 | 60 / 60 | plus | ABC11309 |
| JLOC1 | JLOC1_23691.1 | 956 | 8e-25 | 224 - 283 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18554 | 528 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22639 | 528 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus |
Contig Sequence (528 bp)
>U35_22639 528 Hv_44K_v2 GCTCCCCACCCCCCCTTCAGCAGTAAACACCACACCAACGCCGCCGCCGCGCCGCCAGCC CGCCGGGAGCACCGCCGGAGGAGCCAGCCATGGATCGGTACCAGCGGGTCGAGAAGCCGC GGCCCGAGGCCGCCGCCATCAGCGAGAACGAGATCCGTATCACCACACAGGGCCTCATCC GCAACTACGTCACCTACGCCACCTCCCTCCTCCAGGAAAAACGGGTGAAAGAAATTGTGT TGAAGGCCATGGGACAAGCTATCAGCAAGACAGTGGCTATTACTGAGATCATAAAGAAAA GGATCCCTGGGTTGCATCAAGATACAACAATCAGTTCAGTCAGTATTACTGATGTATGGG AACCCATTGAGGAAGGCCTTGTACCATTGGAGATGACCCGTCATGTTTCAATGATCTCAA TCTCCTTGTCACCTAAGGAGCTTGACACGAATTCGCCCGGATATCAAGCTCCATTGCATG CAGAGCCACTTAAACCGAGGTACCAGCAAGTTCAGCGATATCAACAAC
Homology of Contig U35_22639 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g06980.1 | 310 | 1e-87 | protein|nucleic acid binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g73960.2 | 293 | 3e-94 | |
| Arabidopsis v10 | AT3G07030.1 | 405 | 3e-65 | Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405 |