barSeed - Barley Seed Development Database

Probe CUST_37841_PI390587928

Source Contig U35_22643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37841_PI390587928	Hv_44K_v2	CTGGCATTCAGCCTTTTATGGCTTGGCTTGTATTAACTCTGATGAATTGCTGGGAAAAAA	1133	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.518	1.522	1.212	0.818	0.303	0.335
Raw	3784.153	5962.593	4118.997	4422.897	568.339	687.421

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41234.1	3803	6e-21	2823 - 2878	98	55 / 56	plus
JLOC1	JLOC1_41233.1	1270	6e-21	790 - 845	98	55 / 56	minus
Harvest21	ABC00332	1247	5e-23	1134 - 1189	100	56 / 56	plus	ABC00332
Harvest35	U35_22643	1204	3e-25	1134 - 1193	100	60 / 60	plus

Contig Sequence (1204 bp)

>U35_22643 1204 Hv_44K_v2
GAAATTTCTCAGTTGGTTCAAAGTGCACTTGATGGCTATAAGGTATGCATATTTGCTTAC
GGGCAAACTGGTTCTGGTAAGACGCACACTATGATGGGAAATCCTGAGTTCAATGATCAG
AAAGGGTTAATACCTAGATCGCTTGAACAAATTTTTGAAACTAGTCAATCTCTTATGTCA
CAAGGATGGAAATATAAGATGCAGGCTTCAATGCTAGAAATATACAATGAGACTATACGT
GACTTGTTAGCGGCAAGTCGCACATCCATCCAAGATGGTGCTGCTTCGAAATATAATATC
AAACATGATTCCAATGGTAATACCCAGGTGTCTGACCTGACAATCGTTGATGTACGAAGT
ATCAACGAAGTTTCTTCTTTGCTCAAGCGGGCTGCACAAAGCAGATCAGTTGGAAAAACA
CAAATGAATGAAGAATCATCTAGAAGTCACTGTGTTTTCACGCTTCGGATTTTTGGTGTA
AATGAGGGAACTGATCAACAAGTGCAAGGTGTTCTCAATTTAATTGATCTTGCAGGCAGT
GAACGGCTTAACAAAAGTGGTGTCACAGGGGATAGACTCAAGGAAACCCAGGCAATTAAC
AAGAGTTTGTCGTCCTTGAGTGATGTTATCTTCTCCATTGCTAAGAAAGAGGAACACATT
CCATTCAGGAACTCCAAGCTGACGTATCTACTCCAGCCATGCCTGGGTGGAGACTCGAAG
ACGCTAATGTTTGTGAATCTATCCCCGGAAGTGTCTTCTACAAGCGAGTCTATTTGCTCG
CTTCGTTTTGCTGCTCGGGTGAACTCTTGTGAGATCGGCGTCCCTCGTCGTCAGACTCAA
ATGCGCAGCTTGTCACAAGGATGAGTCTACGCAGTCAATTCACTGTCAAATCCCATCCCA
TCCATGGGCCATCAGTAATGTACGTGTGTTGTTTGTTTGTTGATAATTGAGGGATGCAAT
CCATCATTTGCACCGCATTTAGAGGTTGTATATTCTCATTTGCTTTGTTGTTTGTTCTTG
CTGATTATATTAACAGTCAGTCAGGTGTGGCGTGCTGACGTTTCCGTTTCAATCATCTAA
TCTGTATCGGTTTTTGATACTCTACTATAGCGTAGTTGAGCTCTGTAGGTGTACTGGCAT
TCAGCCTTTTATGGCTTGGCTTGTATTAACTCTGATGAATTGCTGGGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_22643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g01490.1	395	0.0	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g59490.1	684	0.0
Arabidopsis v10	AT4G05190.1	790	9e-150	\| Symbols: ATK5 \| kinesin 5 \| chr4:2675338-2679482 FORWARD LENGTH=790