barSeed - Barley Seed Development Database

Probe CUST_37840_PI390587928

Source Contig U35_22644

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37840_PI390587928	Hv_44K_v2	TTAAGAGGGTGACTATTGCTCTTGACTCCTCACTCTATCCAGAGAACCCACTGATCGTTT	780	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.885	0.963	2.424	2.619	0.894	0.576
Raw	53.368	88.405	202.144	340.405	41.262	29.637

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377022	1834	2e-24	882 - 941	100	60 / 60	plus	ABC19716
MLOC	MLOC_32084.1	2107	2e-24	1395 - 1454	100	60 / 60	minus	ABC19716 ABC23457
JLOC1	JLOC1_20991.1	2095	8e-25	652 - 711	100	60 / 60	plus
Harvest21	ABC21612	609	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_22644	913	3e-25	781 - 840	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_22644 913 Hv_44K_v2
TCTGATCTTGACTTCCCCGCCCCACCGCCGTCATGGCCACCGGCGGCAACCCCAACCCCA
CCCCCGGTCAGCCACGCCCGCAGCAGCCGCCGCCGGGAAGCTCTCCAGCGACCCCGCACA
CCCACATGCGCCCCCCCACTCTCGGCGGTTCCCCCTTCCAGGGTCTTTTCCACACCCCGC
CTAGCCACAATCCTGCTTTTCAGATTCACATGGGCGCATCCTCCTCCCCCCAGACCCCAC
TAATGGCCGCGGCTGCCGCGGCCGCGGCCTCTGCCGCCGCATCGGCTAAGCGCCCTCCTC
AGAAGCCCCCTTCGCGTCCGCCGGCACCCACATCCAACGCCGCCGCAGCGTCCATGGCCG
CCGCTTATAAGGCTGCTAACTCCGGCAGCGTCGACCTCACCCCTGCTGCTCGCCGCAACA
AGAAGCGCAAACTCCCGGAGAAGCAGCTCCCGGACCGCGTCGCCGCGCTGTTACCGGAGT
CCGCGCTCTACACGCAGCTCCTCGAGTTCGAGGCCCGCGTAGACGCAGCGCTCGCGCGCA
AGAAGGTGGACATTCAGGAGGCGCTCAAGACACCACCGTCCCTCCAGCGCACGCTCCGCA
TCTACGTCTTCAACACCTTCGCCAACCAGGCGCCCCGCACCATCCCGCCGCCCAAGAATG
GCGATCCGCCCACCTGGTCGCTCAAGATCATTGGCCGTGTGCTTGAAGACGGTGCGGAGC
TGGACCCAGCCAGTGTCGTACCGAAGCACAACCCAGTGTATCCGAAATTCTCCTCGTTCT
TTAAGAGGGTGACTATTGCTCTTGACTCCTCACTCTATCCAGAGAACCCACTGATCGTTT
GGGAGAATGCACGGTCTGCTGCGCCTCAGGAAGGGTTTGAGGTGAAGAGGAAAGGGGATA
AGGAGTTTCTTGC

Homology of Contig U35_22644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31320.1	464	2e-110	protein\|SWIB/MDM2 domain containing protein, expressed
Brachypodium v1_2	Bradi5g07730.1	527	6e-126
Arabidopsis v10	AT5G14170.1	534	3e-81	\| Symbols: CHC1 \| SWIB/MDM2 domain superfamily protein \| chr5:4568696-4570444 REVERSE LENGTH=534