- Probe CUST_37836_PI390587928
- Source Contig U35_22649
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37836_PI390587928 | Hv_44K_v2 | TAAGTCACAAGACGAAAGCCAGGAGTCCGACGACGAGGCCACCTCAGAGGGTGGCGACGA | 403 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.834 | 1.305 | 1.032 | 0.789 | 0.343 | 0.248 |
| Raw | 693.398 | 719.931 | 527.200 | 640.293 | 93.157 | 76.534 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53327.1 | 1798 | 2e-24 | 454 - 513 | 100 | 60 / 60 | plus | ABC15564 ABC44131 ABC44152 |
| JLOC1 | JLOC1_34254.1 | 1563 | 8e-25 | 418 - 477 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17005 | 467 | 3e-25 | 404 - 463 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22649 | 469 | 3e-25 | 404 - 463 | 100 | 60 / 60 | plus |
Contig Sequence (469 bp)
>U35_22649 469 Hv_44K_v2 AAACGCTTACCGCAATGGGCAGGAAACCCTCGGCCTCCGCCGCCGCCGCCGCCGCCGCTG CGGCTGCCGACCACGATTCCGCCGTTGCCAGCGCCAAGGCCGCCGAGCTCCTAGCAGCAG CAGCTGACTGCGACGGTATCCATGGGCACTCCATGTTCTTCGACGCCCTCGTGCAGCTTA TACCCCCGCGCTTCTACCTCTCCGCCGACGATGACGTTCGCCCCTACTACCAAGGCCTCT CCAAGGCCGCCAAGGCGGCCATGAAGGCTCAGTCCCGCGCCAATATCAAGGCTGCCCGCC GAGCCCGCCTCGACCCCGCGGGGCCGCCTTCCTCCACCCTCGACCTTCTCAAGAAGTCCG TTGCCGACCAAGAGGCGGAGGAGAAGAAGGAAGAGGAGGAGGATAAGTCACAAGACGAAA GCCAGGAGTCCGACGACGAGGCCACCTCAGAGGGTGGCGACGACGACCA
Homology of Contig U35_22649 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |