barSeed - Barley Seed Development Database

Probe CUST_37823_PI390587928

Source Contig U35_10672

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37823_PI390587928	Hv_44K_v2	CCTGATATGATTTGATCTGTTCAACTGTTGTGTTTGATCGTCATCTTCAGTTGGATAAAA	620	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	47.516	27.332	2.584	0.215	0.185	0.192
Raw	1801.797	1631.416	127.878	16.873	3.359	4.584

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC26307	708	3e-25	29 - 88	100	60 / 60	minus	ABC26307
Harvest35	U35_10672	708	3e-25	621 - 680	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_10672 708 Hv_44K_v2
GGACCGCCGCCGTCATGCGCGCCTTCGCGCTGCGGGACCCGCGGCACAAGACCCGCCACC
TCTGGTATCCGGTCTGGCTCGCCGACGTCCAGTCCGCCGTCGATAACGCCGTCCGCAGGC
TGTCCCGTGCGCGGTCGGAGCTGGAGGCCGCGTGCTCGGACGTGGACGCCTTCCTCGCCG
TGCCGGCTCCCGCCCACTCCCAGGGAGCCGCCGGGGCGTGCGCCGCCGCGGCTCGCCACG
CCCGTAGCGGCGTTGCCAACTTGGACGCCCTCGTCGACATCCTGCGCGTGCTTGAGGACG
AGCTCGAGGACGAACCCCCGACCGCCCGCGTCATGCACTTCTTCGGCTACGTCCTGCCGC
CACCGGCCATCGACGCCGGAGCCGGAGCCGGAGCAGCAGGAGGCGCAGAAGCAGCCGGAG
ATGACGCCGACGCCGACGCCGGCAGACATTGATCCATCCATCGCCTTCCCAATGCTTGGC
CTTTCTCCTGCACCATGCTCCATGCATATCGATCGATTCGATTGATCCCCCCATATCTAC
AGATTGAACTCAAGTCTTGGTGAGGTAGATAATAATTAATTGCTGCTATGTGAGAGAGAA
CTTAATCAGATCGATCGTAACCTGATATGATTTGATCTGTTCAACTGTTGTGTTTGATCG
TCATCTTCAGTTGGATAAAATTTTATGTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_10672 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None