- Probe CUST_37822_PI390587928
- Source Contig U35_46601
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37822_PI390587928 | Hv_44K_v2 | TAGCTTCAGAAAGACCGCGATTTTTCGTACGATGCCTGAGTTGTTGAAACTGGCTACGAT | 449 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.399 | 1.457 | 1.077 | 0.869 | 0.376 | 0.413 |
| Raw | 1781.973 | 2999.156 | 1890.793 | 2447.893 | 366.125 | 432.779 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355736 | 4340 | 2e-24 | 4071 - 4130 | 100 | 60 / 60 | plus | ABC11675 ABC11676 |
| MLOC | MLOC_5047.5 | 1330 | 2e-24 | 1077 - 1136 | 100 | 60 / 60 | plus | ABC11675 ABC11676 |
| MLOC | MLOC_5047.4 | 3773 | 2e-24 | 3538 - 3597 | 100 | 60 / 60 | plus | ABC11675 ABC11676 |
| MLOC | MLOC_5047.3 | 3714 | 2e-24 | 3475 - 3534 | 100 | 60 / 60 | plus | ABC11675 ABC11676 |
| MLOC | MLOC_5047.2 | 3766 | 2e-24 | 3508 - 3567 | 100 | 60 / 60 | plus | ABC11675 ABC11676 |
| JLOC1 | JLOC1_3215.2 | 3757 | 8e-25 | 3481 - 3540 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3215.1 | 3785 | 8e-25 | 3509 - 3568 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46904 | 564 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11676 | 628 | 3e-25 | 228 - 287 | 100 | 60 / 60 | minus | ABC11676 |
| Harvest21 | ABC11675 | 1327 | 5e-23 | 1167 - 1225 | 98 | 59 / 60 | plus | ABC11675 |
| Harvest35 | U35_46601 | 564 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18435 | 2215 | 3e-25 | 1670 - 1729 | 100 | 60 / 60 | plus |
Contig Sequence (564 bp)
>U35_46601 564 Hv_44K_v2 CTTCCCCGTCCGGGGCCGCGGGGCTGGGCACCAGCGGCGTCTACGTGCCGCCGATGCGCC GGCTGCGCTCCGTCATCGCCTCCACCAACGGGAACCTCGCGCCGCCGCCCGCCGTGCAGC CCGCGTGGACGCCCGACTGGCGGGCCGACGGGCGCTCCCTCAGCCCCCCGTCGCCGCCTG GGGCGCAGCAACGCCGCGCCGCGCAGCTCCCGCCCCGGCCGCCGCCCCAGATGCAGCCCT TGCGCCAGCAGAGCGCCGGGTACTCTCGCTACGCCTACGACGACAACCAACGCGAGAGAC CAGCAGGCCGCGGACCACATGTCCATGCTGACGAAGCCAGCTCCACGCAGGCGGCGGCAC CACCATAGGAGGAGCTGATTAGCGCAGAAAGGTTTTGTTCGTTCCCCCCAGTCAGGCGAA CAGCGATAAACAGAATACATACGGTAGATTAGCTTCAGAAAGACCGCGATTTTTCGTACG ATGCCTGAGTTGTTGAAACTGGCTACGATCGCCTGAAATGGGGTAGTCCTGGTCTTCATT CTTGGATCCCAGGTTCCTACTCCT
Homology of Contig U35_46601 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |