barSeed - Barley Seed Development Database

Probe CUST_37813_PI390587928

Source Contig U35_10678

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37813_PI390587928	Hv_44K_v2	GCCCGTCGTGGGCGGGCTGCTGCGGTTCCTGCGGGGCCCCATCCCGCTTATCCGGGCCGA	207	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60449.3	1772	2e-24	281 - 340	100	60 / 60	plus	ABC05223
MLOC	MLOC_60449.1	1981	2e-24	416 - 475	100	60 / 60	plus	ABC05223
MLOC	MLOC_60449.2	2096	2e-24	531 - 590	100	60 / 60	plus	ABC05223
JLOC1	JLOC1_39418.1	2061	8e-25	416 - 475	100	60 / 60	plus
Harvest21	ABC05222	537	3e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC22229	266	1e-24	208 - 266	100	59 / 59	plus
Harvest35	U35_16200	2006	3e-25	433 - 492	100	60 / 60	plus
Harvest35	U35_10678	267	3e-25	208 - 267	100	60 / 60	plus

Contig Sequence (267 bp)

>U35_10678 267 Hv_44K_v2
CAGCCCCACCCCACCCCGTCTCGCCGGCCGCCCGGCCGCCCCAACGAGTGCATCGGACGA
GGCCACGGCCATGGATCTCCTCGCGGACGCGCAGCCCCAGTGGCTCCTCGCCGGCGCGGC
GCTGCTGCTCGCCACCGTCGCCTTCCTCAGGGTCCTCCTCGGCTCCGGCCGCGGCGGCAG
GCGGGCGCCGCCGACGATCCCGTGCGCGCCCGTCGTGGGCGGGCTGCTGCGGTTCCTGCG
GGGCCCCATCCCGCTTATCCGGGCCGA

Homology of Contig U35_10678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None