barSeed - Barley Seed Development Database

Probe CUST_37805_PI390587928

Source Contig U35_22654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37805_PI390587928	Hv_44K_v2	CGTTTCTACGTTTGGTATATATTGTACTGTTGAGAGATTGTAATCAAGGTACTGTATTGG	448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60984.2	1995	2e-24	39 - 98	100	60 / 60	minus	ABC13792 ABC13793 ABC17526 ABC22400
MLOC	MLOC_60984.1	2542	2e-24	92 - 151	100	60 / 60	minus	ABC13792 ABC13793 ABC17526 ABC22400
MLOC	AK373054	2262	7e-23	2167 - 2227	98	60 / 61	plus	ABC13792 ABC13793 ABC17526 ABC22400
JLOC1	JLOC1_39806.1	2312	8e-25	2155 - 2214	100	60 / 60	plus
Harvest21	ABC17526	566	3e-25	60 - 119	100	60 / 60	minus	ABC17526
Harvest35	U35_22654	567	3e-25	449 - 508	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_22654 567 Hv_44K_v2
GGGGGTTCATGCAGGGGCACATGTGGCGCCAGGACGCCTGCCTCGTCAACGCCGACGGCA
CCATCAACGACGCCGGCCAGAGGTTCATCAACCTGCGGCAGGAGTGGACGTCGCACGCGC
GCGGGAAGATCGACAGCGACGGCAACTTCAAGTTCAGAGGGTACCACGGCTCGTACGTCG
TGCAGCTCGCCACGGCCACGGGGAAGATGCACAAGGCCTTCAGCGTCGACAAGGGGGACA
CACCTCTCGTGCTGGACATGGACGTGTGACAACGGTTACCTACTACGGCTATTATCTCCG
AGTATATATATATATATAGTTATACTATATATACTCCTTGGTATACTAACTAATACTCTA
CACACATACAAGCACACATTGATTAATTTGATCTAATGGGGTCGGCAAAGGGATTGTACC
ACATACTACAACAACTAGTATAGTTTTGCGTTTCTACGTTTGGTATATATTGTACTGTTG
AGAGATTGTAATCAAGGTACTGTATTGGTTAAAATTAATGGAAATGAATGAATAAAATTA
ACGATATTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g02320.1	590	7e-52
Arabidopsis v10	None