barSeed - Barley Seed Development Database

Probe CUST_37800_PI390587928

Source Contig U35_22659

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37800_PI390587928	Hv_44K_v2	AAATATGATCTTCTGGACTCGCTTCGTGTATGACTGTGGTACTGAACTCGTTCGTCTCCA	875	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33861.1	3045	2e-24	1669 - 1728	100	60 / 60	plus	ABC14275 ABC14276
JLOC1	JLOC1_21879.2	2926	8e-25	1483 - 1542	100	60 / 60	plus
JLOC1	JLOC1_21879.1	2883	8e-25	1542 - 1601	100	60 / 60	plus
Harvest35	U35_22659	951	3e-25	876 - 935	100	60 / 60	plus

Contig Sequence (951 bp)

>U35_22659 951 Hv_44K_v2
GGTTTTTTGTATTTGATCAAGGTGAATCAGGAGAAAGGAATGAACCTCTTTCGTGTGCCA
ACGTACGATGTGGATCTAATGTGGCACACCCACCAACTGAATTCTGTTATCTACTACAGT
GACATGCTGAATCTCCTTGGAAGAGTTCTGGAGCATGATGACACAGATGATGACCGAGCT
GAAGGAAAGAAGCTCGACACCGGTTTTTCAGGGACCACCGAGCAGTTCGAGAATACCTTT
GGTCTGAGATACTGGAAGGTTGGTGCTATGTACCGTGGAAGCTTGCCATGTCCTGTGACA
TCCATTCCTCAGATATTTAGTAGTGAGGACGATGGTGTTTTTGGTGTCGATAAAGCAGAG
AAGCATCTTACTATTCTTGAAACAACAGTTGTGGAGTTATATTTACAGATTGTGGACATC
AAGAATTTACCATCTGCAATTCCAGAGAAAAGTGTGTACGTGTGGTTCACCAAGACTCAA
CCAGATGTATTTATAAGTGATGGTGGCAGGTTAGATATTTCAACGAAAACAGGGAAGAGT
ATTGGAGCTGGTTTCCAATGTGAACCGACTGGCGAACTCATTCTTACAGCAATGGTTGAT
CAGGCCTATTTTGGTGCATCTTCATCGAAGAAATCAGAACCACTGGGGAAGGTTTTGATC
TCTCTTCAAGAGTTTACACAGCCTGATTCCAAGCTTTCCTTTGAGAGGTGGTTTGAACTG
AAAAGTCATGGTGCATATGCTGGTTCCCCTCCTGTCAGTCTTCGTGTTGCTGCATCTTGT
ACTGTCCCAAGGCAGGCTCCACAGGTTCTTAGCATGGTCAATGTGAAGCCTTTCTCTCTG
AAGGCCTTTCTATTGCCACATTCCATCAAGGATCAAAATATGATCTTCTGGACTCGCTTC
GTGTATGACTGTGGTACTGAACTCGTTCGTCTCCAGATAAGGGAGCACAAG

Homology of Contig U35_22659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g40590.2	931	1e-158	protein\|DUF1399 containing protein, putative, expressed
Brachypodium v1_2	Bradi4g13267.1	681	0.0
Arabidopsis v10	AT4G37900.1	787	1e-77	Protein of unknown function (duplicated DUF1399) \| chr4:17821737-17824445 REVERSE LENGTH=787