barSeed - Barley Seed Development Database

Probe CUST_377_PI415269222

Source Contig AV833301

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_377_PI415269222	Hv_44K_v2	ACAATCTTGGTTCTCAGACATTGCCAAAAACTCACCACTGTTTCTCTATGAGGTTGACAT	578	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.472	0.960	1.574	1.037	0.874	0.868
Raw	78.393	71.104	112.144	107.241	34.790	37.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62261.1	1971	2e-24	533 - 592	100	60 / 60	plus	None
JLOC1	JLOC1_40728.1	1952	8e-25	211 - 270	100	60 / 60	plus
Harvest21	ABC27419	708	3e-25	568 - 627	100	60 / 60	plus
Harvest35	U35_28501	708	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (641 bp)

>AV833301 641 Hv_44K_v2
TTCGGCACGAGGGCAGCATAAGCAAATTGATCGCCCCCCTTTGGCTGTCAGTACTAAACC
AAAAGTTCTTCTGGTACCAAGAACTGAACCGCCAAAGGCTGTGAAGGGATCAACTCAAAG
AACAATTGAAGTTAGCAAGGATATAAAGAGACAAAAGAAAGGCCTGAAAGCAGACGAAGT
GGAAAACTTAAAAGCTTGCCAGCTTGAATTTGGGAGCTACTGCCTCTGGTCAACAGAATA
CAAAGTAATTATGAAGGATTCAGTAGTGAAAAGGCTAAAAGACCAACTATTCCTGGCCCG
CTCATACTATCCAAGCATTGCCAAACTTCAAGGACAGGAGGCACTTACTCAGGAAATGAA
GCAAAATATACAAGACCATGAGAGGGTTCTCAGTGCAGCTGCTGTTGATGCTGATCTACC
ATCCTTTATCAATAAGAAGATAGAGCAGATGGAGCGCACAATAGCAAGAGCGAAATCATG
CACTGTGGAATGCCACAATGTTGTCAGGAAGCTTCGGCAGATACTTGATATGACCGATGA
TGAAGCTCATTTTCATATGAAGCAGAGTGCATTCCTCTACAATCTTGGTTCTCAGACATT
GCCAAAAACTCACCACTGTTTCTCTATGAGGTTGACATTGG

Homology of Contig AV833301 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48370.1	626	3e-107	protein\|glycosyl transferase, family 8, putative, expressed
Brachypodium v1_2	Bradi1g17570.1	622	3e-112
Arabidopsis v10	AT2G38650.1	619	6e-59	\| Symbols: GAUT7, LGT7 \| galacturonosyltransferase 7 \| chr2:16161856-16165523 REVERSE LENGTH=619