barSeed - Barley Seed Development Database

Probe CUST_377_PI390587928

Source Contig U35_9346

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_377_PI390587928	Hv_44K_v2	TGGTCCTTGCCATGCCATTGTGGGTGATGTATAATACTCCTAATATTGTAATTTTATCAA	1168	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.254	1.496	1.198	0.859	0.372	0.389
Raw	1535.050	2829.214	1985.337	2189.645	342.406	389.067

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8846.1	1109	1e-22	999 - 1057	98	59 / 60	plus
Harvest21	ABC19542	1228	3e-25	1169 - 1228	100	60 / 60	plus	ABC19542
Harvest35	U35_9346	1228	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1228 bp)

>U35_9346 1228 Hv_44K_v2
GGAGCGGCGGATCGCGCAGGGCCGCGAGCGCATCGCGGCGGCCGCGTCCGCCTTCCGCGG
GGAAATCCTCTCCGCCCGCTCGCTCGCCAGCGGCAGCGTCGCGCACCGAGACAAACTCGA
CAGCCTAAAGGATCAGCTCAGGGTGCTCCAGGCAGCTCTGGCAGAGGCTCTCTCCACCCA
ACTGAAGAAAGAATCAGAATGTGAGCTAACCAGGGAATCCATCTCGAACGCCACTGCAAC
CAACGAGCAGCTCAGGAGCCTGGTCGTGGAACAGAGGGCTAGGAGAGATGAGTTTGCAAA
AGTCATAGCACATCAGCGTGAAGCTATCGAAGCTCTTGAAGCTAATGTTGACGTGGTGGG
AAAAAAGAACCTGGACAAAGCTATCATGTGGTACAATAAATTTCTTGGTTTTCGAGTTAT
TGCAGGGGAAGGGGTTACATTTGTCTTCAATAAAGTTGACATGCAAAGACCTGATGATGA
GTATTCGTTTTGCATAAAAGTAAATAACGACGAGTACAGCTTAATTCAGTGTACTCCATT
AATAAAAGACACTGAAGAATTGGTGAAGGATTTGAACCGCACTAACGATCTCTCCAAGTT
CGTTAAAATCATGAGAGCAAGATTCCAAGCGGCTGCAATCAAAGGGGTTCATCCTGCAAC
TTCATTGTGCTCAGACACATCATCCACAACAATGTCATCACCACCGGTCACATCAGTTGA
TACCACAAGTGAAGGCACCACCAATCAAAGCCATTCCCGAAGCCGTTCCAAGAATCAAGA
TATGTGTGCAGAGAGAGGGGCCCCTCCCCGATCAATAGCATCTCCCCTTATGTCGGGATC
TAGCACGCGTCGCTCCCCACGCCTTGCGGCTGCTGCTACAGGGAGTATACATTAAGCAAT
AGACGAAAATCCACTTGGGTGGCACCATGTGATGCGGTTTGGTTGTGTCACAGTTTAGAC
GGCCCTCATCGAGCAAATTCTGAGTTAGACAAACTGAACATGAACGAAAATAAGCAGTGG
GCAGTGTACTTGGTAGACAAAGAGAGTTCCATCTCGAACTCGTCATCCATCTGTAGCTTC
TGTTCCCCTCAACCTGACCTCAGTGCTTCATATTAATCTGTACTGTAGAGTGAAGCATCT
AGCGTTGCAGTTGTAGGCAGCTTGGATTTGGTCCTTGCCATGCCATTGTGGGTGATGTAT
AATACTCCTAATATTGTAATTTTATCAA

Homology of Contig U35_9346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74170.1	333	2e-97	protein\|expressed protein
Brachypodium v1_2	Bradi2g62257.1	320	5e-125
Arabidopsis v10	None