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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3779_PI390587928Hv_44K_v2CGCCAGTGAAGAGTATGTGTACTTCTGCATCAGTGGATCTAATGTAATATATATGTATTT395GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5992.1011.1791.0570.3130.262
Raw 909.4431850.298900.7031241.892134.941120.487



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_59170.238522e-243751 - 381010060 / 60plus ABC34233
MLOCMLOC_59170.438812e-243674 - 373310060 / 60plus ABC34233
MLOCMLOC_59170.139782e-243832 - 389110060 / 60plus ABC34233
JLOC1JLOC1_38486.336208e-253466 - 352510060 / 60plus
JLOC1JLOC1_38486.238628e-253708 - 376710060 / 60plus
JLOC1JLOC1_38486.138998e-253745 - 380410060 / 60plus
Harvest21ABC342335123e-25396 - 45510060 / 60plusABC34233
Harvest35U35_383165123e-25396 - 45510060 / 60plus



Contig Sequence (512 bp)

>U35_38316 512 Hv_44K_v2
GGGGAAATGCCTAGAGGAAGAATACCTGGTGGATGAACCGTCTTGTTCGACGCCAAGGAG
GCGGGAAATCGACCTTCCAAGTGCCGAGTCGATCGAGGAGCTGCGGACCCCGGACTACGA
CGAGCTCCTCAGGTCGTTCCACGAGTCGAGGGCTGGGCGGAAGCAGGCGAACGGAGACAC
GAAACACCTCCCGGAGGCGCAGGAGGAGTCGCCGTCGTCGGTCAGGGATGGGAGGGTCCC
CCTTATAGCGAGAAATTAGATTCACCCAGATCATGTACAAAGGAGCCATTTGTTTAGTTT
TACCATTTGCCCAGTTGGTTTGCTGTTGATAGTGCCATCCATCCATTTGATTAATTGCTA
TTGTCGGTCGAGGGGTTTGCTGTTCTTAGGCTGGTCGCCAGTGAAGAGTATGTGTACTTC
TGCATCAGTGGATCTAATGTAATATATATGTATTTACATAGGCAACACAGTGAAAGAATA
ATGTTTTTGAGAACCAAAAAAAAAAAAAAAAA



Homology of Contig U35_38316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None