barSeed - Barley Seed Development Database

Probe CUST_37785_PI390587928

Source Contig U35_46614

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37785_PI390587928	Hv_44K_v2	GAGAGGGCCAGCACGGTGCCCGGGAGCGTCACGGAGGAGGCGCAGGTGCTGGTGAAGGCC	179	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364194	1899	9e-22	641 - 695	100	55 / 55	plus	ABC23669
MLOC	MLOC_21688.1	1804	9e-22	955 - 1009	100	55 / 55	plus	None
MLOC	MLOC_21688.2	1753	9e-22	889 - 943	100	55 / 55	plus	None
JLOC1	JLOC1_15045.1	1701	5e-22	863 - 917	100	55 / 55	plus
Harvest21	ABC46945	279	3e-25	180 - 239	100	60 / 60	plus
Harvest35	U35_46614	279	3e-25	180 - 239	100	60 / 60	plus

Contig Sequence (279 bp)

>U35_46614 279 Hv_44K_v2
TGAAGCGCCTCTGCATGTGCGANCGCCTGGGCCCCCGCACCGTCGAGCAGCTCCGCCCCG
TACGCCGCTCCGGCCTCGTGTCCCTGCTGCGGAGCGTGCTGCACCGGGCGTCGGCGGGGG
CCGACGCGGTGGACCTCACCGCCGCGCTCATCCGGCTGTCGAACACGTCCATCGGGGGGG
AGAGGGCCAGCACGGTGCCCGGGAGCGTCACGGAGGAGGCGCAGGTGCTGGTGAAGGCCG
TGGCGGAGCTCGTCGGCGCGTTCAACGTCGAGGACTACA

Homology of Contig U35_46614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None