barSeed - Barley Seed Development Database

Probe CUST_37784_PI390587928

Source Contig U35_10687

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37784_PI390587928	Hv_44K_v2	TGATTTCATTTCATTTCATTCGATCATCTCATCACACACAACACCAAAGCCAAAAGGCCG	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64183.1	2715	7e-23	18 - 77	98	59 / 60	plus	ABC08153 ABC49770
MLOC	MLOC_64183.2	2777	7e-23	2628 - 2687	98	59 / 60	minus	ABC08153 ABC49770
JLOC1	JLOC1_42111.1	3032	4e-23	208 - 267	98	59 / 60	plus
Harvest21	ABC30275	324	1e-23	49 - 108	98	59 / 60	plus
Harvest35	U35_10687	399	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (399 bp)

>U35_10687 399 Hv_44K_v2
AAACGGGGGGGAACTGAAAGCAAACGGAGGCCGAGCCGCTTCTCCGATTGATTTCATTTC
ATTTCATTCGATCATCTCATCACACACAACACCAAAGCCAAAAGGCCGCGACGCCGGGCT
TCCGTCCCCTTCGCGATTTGATTCGTCTCCCCACCTCCCGTTCCGCTGCCCCATGCCTCC
CGCCCGCCCCCTGCGCGCCGACTCCTCCTGACCCCGTCCCCGTCCCCGGCGCCGCCGCCG
CCGCCGCCATGGCCGTCGATTCCGACAGAGGGGAGGGGGATTTGGAGATTGGGTTGGCGT
CGCCGGGGTCGGAGGGAGGAGGGGTTTCGCCCGCCGCCCCAGGCCGCCGGGCGCTCGAGT
CCTGCCTCTCCGGGAAGCGCCTCGACCAGTCGCCGTCGC

Homology of Contig U35_10687 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None