barSeed - Barley Seed Development Database

Probe CUST_37783_PI390587928

Source Contig U35_46616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37783_PI390587928	Hv_44K_v2	ACAAAGTACACCGATGGGTTTTGCAGGAAAGGACATCAAGAAGCTTAAGCTGAAGTCGCT	228	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54963.3	4317	7e-23	3492 - 3551	98	59 / 60	plus	ABC07977 ABC07979 ABC16427
JLOC1	JLOC1_35422.3	4865	4e-23	3996 - 4055	98	59 / 60	minus
JLOC1	JLOC1_35422.2	4695	4e-23	3826 - 3885	98	59 / 60	minus
JLOC1	JLOC1_35422.1	4736	4e-23	3867 - 3926	98	59 / 60	minus
Harvest21	ABC46950	366	3e-25	229 - 288	100	60 / 60	plus
Harvest35	U35_46616	366	3e-25	229 - 288	100	60 / 60	plus

Contig Sequence (366 bp)

>U35_46616 366 Hv_44K_v2
CCGGTACCCGTCGAGGTCGGAGGGGGGCGTGTTCAAAGGGCTCGACCTCCTGATGAAGGC
CGGCAAGAGCATGGCGCTCGTCGGGATGAGCGGCTCCGGCAAGAGCACCGTTCTTTCGCT
CATCCTGCGCTTCTACGACCCGATCGCCGGAAAAGTCTTGATCGATGGTATTTTGCTGGG
GGGGTTTCGAACATGACGGCTTCTGTTCCTGATGAGCTGATCAACTGAACAAAGTACACC
GATGGGTTTTGCAGGAAAGGACATCAAGAAGCTTAAGCTGAAGTCGCTGAGGAGGCATAT
TGGCCTGGTGCAGCAAGAGCCGGCGCTGTTCGCGACGACGATCTACGAGAACATTCTCTA
TGGCAA

Homology of Contig U35_46616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None