- Probe CUST_37776_PI390587928
- Source Contig U35_22663
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37776_PI390587928 | Hv_44K_v2 | GAGATTGGAGAGAAAAACTGGTGGTGGTAACTGGTAGCTGTCATTTACTAATTGTTTTTT | 536 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.358 | 2.879 | 1.084 | 0.819 | 0.383 | 0.493 |
| Raw | 2138.203 | 4057.727 | 1326.401 | 1666.282 | 252.881 | 357.694 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_14666.7 | 1416 | 2e-24 | 152 - 211 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | MLOC_14666.1 | 1576 | 2e-24 | 210 - 269 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | MLOC_14666.4 | 1207 | 2e-24 | 162 - 221 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | MLOC_14666.5 | 1216 | 2e-24 | 162 - 221 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | MLOC_14666.2 | 1472 | 2e-24 | 210 - 269 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | MLOC_14666.3 | 1163 | 2e-24 | 210 - 269 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | MLOC_14666.6 | 1111 | 2e-24 | 156 - 215 | 100 | 60 / 60 | minus | ABC19812 |
| MLOC | AK376589 | 1259 | 7e-23 | 1185 - 1245 | 98 | 60 / 61 | plus | ABC19812 |
| JLOC1 | JLOC1_10013.3 | 1479 | 8e-25 | 1206 - 1265 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10013.2 | 1170 | 8e-25 | 897 - 956 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10013.1 | 1161 | 8e-25 | 888 - 947 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22663 | 627 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus |
Contig Sequence (627 bp)
>U35_22663 627 Hv_44K_v2 ACGCCGTCAAGGAGCGCGCCGTCGACCTCNTTCTNCGCGCCCAGCCCGAGGTGAAGATGG CGGAGTTCTCGCCGTCCGTGGTGGCCGCGTCGGCGCTGCTGGCCGCCGCCGGAGAGATCG CCGTCGCCCACCTCCCCGCGTTCCAAGCCGGCGTGGCCGCTTGCTCCTTTGTAAATAGCG AGAAGCTACGTGAGTGCGGCGAGGTGATGGCGGCGGTCTGCGGCGTCGGGCCGGGCTGGA CGGCGGCGAGCGCTGACACGCCGGTGACGGTCCTCGGGCACGGCCACTACCGCAGCGCCA GCTCGGAGAGCGAGCGGACCGTCGGATCGGTGGCCAACGGCACCGATGCCAAGAAGCGAT GCATGGGCCCACCTTCCCAGTGGGGGTAGGAGGCAGGACGTCGTCCGATGACCCGATGGG GCGTGACAGCTGGAAGAGCCGGGGATTTACTCTTGCCATGTTGTTCCTTTTTTACTTTTA TTTCGATTCCTTTTCCATTTTAATCTTCTCGACTCGAGGTGAAGTAAGCAGGGATGGAGA TTGGAGAGAAAAACTGGTGGTGGTAACTGGTAGCTGTCATTTACTAATTGTTTTTTTTGT TTCCCTTGTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_22663 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |